Query= MSMg01no517_a10.b1 MSMg01no517_a10.b1 CHROMAT_FILE:
MSMg01no517_a10.b1 PHD_FILE: MSMg01no517_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:58 2005
(651 letters)
>mm_chr3_129805291_129806341
Length = 1051
Score = 1236 bits (639), Expect = 0.0
Identities = 645/647 (99%)
Strand = Plus / Minus
Query: 5 gaattcccacttagaaagagacacagaagtcggtatagtaggcatatcgttaacatttag 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 758 gaattcccacttagaaagagacacagaagtcggtatagtaggcatattgttaacatttag 699
Query: 65 aaatttagaaaaatgttcgtaaaaccttttggagaatacaacaaatggcctacaaaagag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaatttagaaaaatgttcgtaaaaccttttggagaatacaacaaatggcctacaaaagag 639
Query: 125 cagaagtatgattcccgatggacatttaccacaaactagtgcgattctggattttgactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cagaagtatgattcccgatggacatttaccacaaactagtgcgattctggattttgactc 579
Query: 185 aaagtagttgaagaatatacaggaagttgtcggctgggtccatagctgtggagacaggaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aaagtagttgaagaatatacaggaagttgtcggctgggtccatagctgtggagacaggaa 519
Query: 245 aggggacaaaaggagattcatgttattccctctttgaacatatttaaatttctctataac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 518 aggggacaaaaggagattcatgttattccctctttgaacatatttaaatttctttataac 459
Query: 305 agaaaatttttagaagaaaaagaattctaggaatgatttgattcctcagcaacatggtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaaaatttttagaagaaaaagaattctaggaatgatttgattcctcagcaacatggtaa 399
Query: 365 gcaagatattttttaaatgacttgcataaactgaaagttaatggctttcaaagtagagtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gcaagatattttttaaatgacttgcataaactgaaagttaatggctttcaaagtagagtt 339
Query: 425 ctgtgctttgacaagctatggaggacgtatgaatggccttgggttaatcaatggcagtcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgtgctttgacaagctatggaggacgtatgaatggccttgggttaatcaatggcagtcc 279
Query: 485 atcctagtgactgggagggacaaggcatttggggacatttgccagagaaacaggaatcag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atcctagtgactgggagggacaaggcatttggggacatttgccagagaaacaggaatcag 219
Query: 545 ctgtcttcaaatagttttttattttaaaatattatttatccctttatatatgtataacta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctgtcttcaaatagttttttattttaaaatattatttatccctttatatatgtataacta 159
Query: 605 ttcttgcctgcatgcatgtctgtgcattgcatctgcacagtgccgag 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttcttgcctgcatgcatgtctgtgcattgcatctgcacagtgccgag 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_a10.g1 MSMg01no517_a10.g1 CHROMAT_FILE:
MSMg01no517_a10.g1 PHD_FILE: MSMg01no517_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:58 2005
(577 letters)
>mm_chr3_129646342_129647325
Length = 984
Score = 1035 bits (535), Expect = 0.0
Identities = 570/589 (96%), Gaps = 17/589 (2%)
Strand = Plus / Plus
Query: 1 ctaatcctcttgccttcacctatcaagttctaggcttacaggcattggctgccatcccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatcctcttgccttcacctatcaagttctaggcttacaggcattggctgccatcccca 260
Query: 61 actttggcacgttttaagaacatgttacatatgaacatgtttaaagatagaaaaaaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttggcacgttttaagaacatgttacatatgaacatgtttaaagatagaaaaaaggtt 320
Query: 121 agaaagaaaataccaaatacccatacagttattttctacaaggtagaattagtacagatt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaagaaaataccaaatacccacacagttattttctacaaggtagaattagtacagatt 380
Query: 181 ttctttcttttttctctctcttttttttctttattgaaattgtaggagctttttaaa--- 237
||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 381 ttctttcttttctctctct-ttttttttctttattgaaattgtaggagcttt--aaagaa 437
Query: 238 aaaagatatatttacagttcttttgaaacacacacacacac------gcatgctcacaca 291
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 438 aaaagatatatttacagttcttttgaaacacacacacacacacacacgcatgctcacaca 497
Query: 292 agtcagcgaggcaggctgagacacacttgttcaaaagtccaaattaaactaggacagagc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agtcagcgaggcaggctgagacacacttgttcaaaagtccaaattaaactaggacagagc 557
Query: 352 tggatgaaagaggaaatgataaaatctggggcgtggttacttcctcagagtcggctgttc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tggatgaaagaggaaatgataaaatctggggcgtggttacttcctcagagtcggctgttc 617
Query: 412 tgatgggcagtaaatgactccagccacagaacacagacaacacagccccaacacatacta 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgatgggcagtaaatgactccagccacagaacacagacaacacagccccaacacatacta 677
Query: 472 gagattttttt---aaaaatctgaaaaatccctctgtggcactttctagaaccttaaaaa 528
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagattttttttttaaa--tctgaaaaatccctctgtggcactttctagaaccttaaaaa 735
Query: 529 tcaaaggttatccaatgagaatagtgagaatagtatccaggatggagac 577
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tcaaaggttatccaatgagaatagtgagaatagtatccaggatggagac 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 984
Length adjustment: 10
Effective length of query: 567
Effective length of database: 974
Effective search space: 552258
Effective search space used: 552258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
