Query= MSMg01no517_c04.b1 MSMg01no517_c04.b1 CHROMAT_FILE:
MSMg01no517_c04.b1 PHD_FILE: MSMg01no517_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:07 2005
(642 letters)
>mm_chr3_115308263_115309304
Length = 1042
Score = 1208 bits (625), Expect = 0.0
Identities = 637/643 (99%), Gaps = 4/643 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctcagaccaaatcaatatgttatttccatgacttcttcaaagtttccattaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggaattcctcagaccaaatcaatatgttatttccatgacttcttcaaagtttccattaag 259
Query: 64 aatttatcagtaggtttccattatctgttatccttacaaaatgtcacatagtagtaactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatttatcagtaggtttccattatctgttatccttacaaaatgtcacatagtagtaactt 319
Query: 124 actaatttagcatatgtagtagatgctttaaacaacagtaattatatatatatat----g 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 actaatttagcatatgtagtagatgctttaaacaacagtaattatatatatatatatatg 379
Query: 180 gagagagggacatttctctctcaatgataataataagtcaaaattaacttaaaataattt 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 gagagagggacatttctctctcaatgataataataagtcaaaattaacttgaaataattt 439
Query: 240 ttaacagaaattaatttcccaacagttctggagagttgaggtctgctatcaagtaaatag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaacagaaattaatttcccaacagttctggagagttgaggtctgctatcaagtaaatag 499
Query: 300 tgttggtttcttctgggggttatgggaagctctggtccaggcctctcttcttgacataga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgttggtttcttctgggggttatgggaagctctggtccaggcctctcttcttgacataga 559
Query: 360 tgaacatcttctccacctgtcttcacgtggcctacttctgtatgcatctgggaatatgtt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaacatcttctccacctgtcttcacgtggcctacttctgtatgcatctgggaatatgtt 619
Query: 420 ttctctttctattaagattccagactcgatcatgcccccaccttaatgacctaattttaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttctctttctattaagattccagactcgatcatgcccccaccttaatgacctaattttaa 679
Query: 480 tttaaccacttatatagaaaaatctatccccagtttgtctctgatcaatttctgggatta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttaaccacttatatagaaaaatctatccccagtttgtctctgatcaatttctgggatta 739
Query: 540 gaaactttgagaggggacacaatatagactaaagactgctaagtgcatataggctataag 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 740 gaaactttgagaggggacacaatatagactaaagactgttaagtgcatataggctataag 799
Query: 600 ctaagcactgcttttggtcctgaaaatataatcatgactcaga 642
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctaagcactgcttttggtcctgaaaatataatcatgactcaga 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_c04.g1 MSMg01no517_c04.g1 CHROMAT_FILE:
MSMg01no517_c04.g1 PHD_FILE: MSMg01no517_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:07 2005
(414 letters)
>mm_chr3_115442376_115443188
Length = 813
Score = 785 bits (406), Expect = 0.0
Identities = 412/414 (99%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 1 acttcatgcccatggggcaggaggaagggcttcagtcttgccaaaggctggtgttcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acttcatgcccatggggcaggaggaagggcttcagtcttgccaaaggctggtgttcctgg 554
Query: 61 aatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttctatgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatccaaagcaacttaaaaagtaagtttgaggacaatgacagtgataggcttctatgact 494
Query: 121 tcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtccttcatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcatcccaggcaaaggggacacatagatgcagactgaagacatagatgcagtccttcatc 434
Query: 181 ctgcttgcctggacctacgtgaggcgtcagtatcacttagcaaaagccacctgctactgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgcttgcctggacctacgtgaggcgtcagtatcacttagcaaaagccacctgctactgc 374
Query: 241 cagtgtcccttatctcttctatacgtcactcaagtgtaggatcttttggcagggaacagg 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagtgtcccttatctcttctacacgtcactcaagtgtaggatcttttggcagggaacagg 314
Query: 301 tggcatgactcagtgtaccatgctcttattgaattttatttcattttacattcctgcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tggcatgactcagtgtaccatgctcttattgaattttatttcattttacattcctgcatt 254
Query: 361 tattttgtgtgtgcacaaatgtacatgtatgtgggtatatgtaggcacatgtgt 414
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 253 tattttgtgtgtgcac-aatgtacatgtatgtgggtatatgtaggcacatgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space: 325620
Effective search space used: 325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
