Query= MSMg01no517_f05.b1 MSMg01no517_f05.b1 CHROMAT_FILE:
MSMg01no517_f05.b1 PHD_FILE: MSMg01no517_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:22 2005
(339 letters)
>mm_chr3_20131899_20132636
Length = 738
Score = 572 bits (296), Expect = e-168
Identities = 325/338 (96%), Gaps = 9/338 (2%)
Strand = Plus / Minus
Query: 4 ggaattccaatattgctcttacacttttacattctcaggagtccaaaattcattttaaaa 63
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 536 ggaattccaatattgctcttacacttttacattctcaggagtccagaattcattttaaaa 477
Query: 64 aggctaaacacacagtgagttaaatatgatgtaaataataattctgtcagtgctgctaat 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gggctaaacacacagtgagttaaatatgatgtaaataataattctgtcagtgctgctaat 417
Query: 124 attaatccacaccaattctaattatactaatcctaattagtatatatactaatagtctta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attaatccacaccaattctaattatactaatcctaattagtatatatactaatagtctta 357
Query: 184 tactaattctaattagtatacagcatttatgttctgcctcagagccagatccataagcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tactaattctaattagtatacagcatttatgttctgcctcagagccagatccataagcca 297
Query: 244 gcttagaagaagaaactcagta-gagaacctctacaatgtttcaactcctcataagaaat 302
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 296 gcttagaagaagaaactcagtaggagaacctctacaatgtttcaactcctcataagaaat 237
Query: 303 tgtgtgtgtgtgggggnng---gggggaggtatggatc 337
|||| | | ||||| | ||||||||||||||||
Sbjct: 236 tgtg---ggggggggg--gagagggggaggtatggatc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 738
Length adjustment: 9
Effective length of query: 330
Effective length of database: 729
Effective search space: 240570
Effective search space used: 240570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_f05.g1 MSMg01no517_f05.g1 CHROMAT_FILE:
MSMg01no517_f05.g1 PHD_FILE: MSMg01no517_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:22 2005
(551 letters)
>mm_chr3_20003645_20004596
Length = 952
Score = 474 bits (245), Expect = e-138
Identities = 272/281 (96%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 272 gcatcatcaacttgacgtttcagattggatatgtaatttttggattaattattcttctct 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcatcatcaacttgacgtttcagattggatatgtaatttttggattaattattcttctct 531
Query: 332 tctgcgctgagtatttctttg-aaaaaaaatattagtcagttttgcctttctatagccaa 390
|| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 532 tccacactgagtatttctttgaaaaaaaaataatagtcagttttgcctttctatagccaa 591
Query: 391 ttcttgtcttcggacttaaagagaaagcttttagtttggctttctgctccagaggtgtca 450
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 592 ttcttgtcttcagacttaaagagaaagcttttattttggctttctgctccagaggtgtca 651
Query: 451 gcccatggtagtggaaactacagagtggaacggagcaatatcatgataaacaagaggcgg 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acccatggtagtggaaactacagagtggaacggagcaatatcatgataaacaagaggcgg 711
Query: 511 acaagagagcaccggaaacaaatgctcaagtcagggcaaga 551
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 712 acaagagagcaccggaaacaagtgctcaagtcagggcaaga 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space: 509622
Effective search space used: 509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
