XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAGATCT
GTCTGCCTCCATTAAACACAGGTGATAAACAAGCTGGGTGGGACTCTGTC
CTGGAATTACTTTTATTTCCACACTCTGTCCTAGGCTGACCTTAAACTCT
TGAATCTTCCTGCATTTGTATCTGCCTGTCTTTGTATCTTCCTGGCAACC
TGGCTCTTTGTGTTCCTTTAGGTCTGTGAGGTTCCTTATACTGTTCATAT
TACATCCTTATATTTAGATTTTCAAACTCATGTTTTTAGAGTCTATGTCA
CTGCTTGGCTATCCTGAAAATCCTAGCATTTACCATTTTGCTAAGACAAA
AATTAGCCACACTTTTGTCTTGTGAACTTGTGCTGTCTGTGATTATCTTG
GAGTCATTCAAGTGAACCAGGGGTACAAGCTTAAATGAGTATGTAAAATT
TACATCATATAAACTAGCCTTAGGTCCACAGCAGCTATTGTCATTTGGTC
CTGTCCCAGGGGCATGAACCCTGTCATTCTGTCCCTACCAAGGCCATTTG
ATCAGGCAGTGGTTGGAAATGGCAGTAGCAGGGATCAAGCAGAGATATCA
GGGAAGGCCTTACTTGTTTTGTTGAGGTCGAGTTTTTTTTTTCTTTTTTT
ACTTCTTTATATATTATATATTTAGGCTACTAACCCCAAACTCAATACAC
TGAATAGAATTTACAAAGATTTTCACCAGCTCCACATTGGACAAAGAATC
TATAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGCTTAGCTCTGTACCCCATTTTTACATAGGGTTAT
TTGATTGTCTGGAGTCTAATTTCTTGAGTTTTTGTATATATTGGATATTA
GCTCTTTATTGGATGTAGAATTGTTAAAGATCCTTTCCCAATCTGTTGGT
TGCCCTTTCATCCTACTGACAGTTTCTTTTCTCTTACAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTCAATTCTTGATCATAGAGGATAAGTCCTTG
TTGTTCTGTTCAGGAAAATTTCACCTGTGCCCATGTATTCAAGACTCTTC
CTCACTTTCTCTTCTATTAGTTTCAGTGTATCTGGTTTTATGTGGAGGTC
ATTGATCCACTTGGACTTGAACTTTGTACAAGGAGATAAGGATGGATTGA
CTTGTATTCTTCTGCATGCTGACTGCCAGTTGAACCAGCACCATTTGTTG
AAAAGGGATATAGTACCCTTCACAATAGTCACAAATATAATATACCCTGG
TGTGACTCTAACCAAACAAGTGAAAGATCTGTAGGACAAGAATGTCAAGT
CTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGATGCAAAGATCTCCCA
TGCTCATGGATTGGCAGAATTAATATAGTAAAAATGGCTATCTTGCCAAA
AGCAATCTACAGATTCAGTGCAATCCTCCATCAAAATTCCATCTCAATTC
TTCATAGATTTAG

Query= MSMg01no517_h19.b1 MSMg01no517_h19.b1 CHROMAT_FILE:
MSMg01no517_h19.b1 PHD_FILE: MSMg01no517_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:35 2005
         (723 letters)



>mm_chr3_112314382_112315504
          Length = 1123

 Score = 1044 bits (540), Expect = 0.0
 Identities = 573/588 (97%), Gaps = 8/588 (1%)
 Strand = Plus / Minus

                                                                        
Query: 144  ctgtctttgtatcttcctggcaacctggctctttgtgttcctttaggtctgtgaggttcc 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 1123 ctgtctttgtatcttcctggcaacctggctctttgtgttcctttaggtctgtgaggcccc 1064

                                                                        
Query: 204  ttatactgttcatattacatccttatatttagattttcaaactcatgtttttagagtcta 263
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1063 ttatactgttcatattacatccttatatttagattttcaaactcatgtttttagagtcta 1004

                                                                        
Query: 264  tgtcactgcttggctatcctgaaaatcctagcatttaccattttgctaagac-aaaaatt 322
            ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1003 tgtcactgcttggttatcctgaaaatcctagcatttaccattttgctaagacaaaaaatt 944

                                                                        
Query: 323  agccacacttttgtcttgtgaacttgtgctgtctgtgattatcttggagtcattcaagtg 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  agccacacttttgtcttgtgaacttgtgctgtctgtgattatcttggagtcattcaagtg 884

                                                                        
Query: 383  aaccaggggtacaagcttaaatgagtatgtaaaatttacatcatataaactagccttagg 442
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  aaccgggggtacaagcttaaatgagtatgtaaaatttacatcatataaactagccttagg 824

                                                                        
Query: 443  tccacagcagctattgtcatttggtcctgtcccaggggcatgaaccctgtcattctgtcc 502
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 823  tccacagcagctattgtcatttggtcctgtcccaggggcatgaacactgtcattctgtcc 764

                                                                        
Query: 503  ctaccaaggccatttgatcaggcagtggttggaaatggcagtagcagggatcaagcagag 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  ctaccaaggccatttgatcaggcagtggttggaaatggcagtagcagggatcaagcagag 704

                                                                        
Query: 563  atatcagggaaggccttacttgttttgttgaggtcgagttttttttttcttttttt---- 618
            | |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
Sbjct: 703  agatcagggaaggccttacttgttttgttgaggtcgagtttttttttttttttttttttt 644

                                                                        
Query: 619  ---acttctttatatattatatatttaggctactaaccccaaactcaatacactgaatag 675
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  tttacttctttatatattatatatttaggctactaaccccaaactcaatacactgaatag 584

                                                            
Query: 676  aatttacaaagattttcaccagctccacattggacaaagaatctataa 723
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  aatttacaaagattttcaccagctccacattggacaaagaatctataa 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)