XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTCC
CTGATTTGGCCAGGGGTAGCAGGGGAAGGTTTAGGAATGTCCAGTCTTTG
AGGTAGCCTAGGCATTTTAAAATTAACTGGTGTGTGTGGGTCTTCCATTC
TCGAATCCAGATAGCTCCTGGGCAGTTGCGTGTATATGATTCTTAAGGAG
CCAAAGCAGTGTAGCCCAAACTCAACGCTACAGGTGTGGCCTTATAGGAG
GAAGTGTGTCACTGGGAGTGGTCTTTAGGGATTTCAAAAGCACAAGCCAG
GCCTCTTTTCCTGCTACCTATGGATCCAGTTGGAGAGTTCTTAGCTCCTT
CTGTACCATGTCTGCCTGCCTTCTTCCATGTTTCCCACCATGCTGATAAT
GCACTAAACCTCTGAAGTTGTAAGACAGCCCCAATTAAATCCTTTTCCTT
GTAAGAGTTGACTTGGTCATGGTATCTCTTCACAGCAGTAGATCAGTGGC
TAAGACAGTGGACATCTGGGCTGATTCCCTCCCTCCGGGACTTACTTTCT
TTTCTTTTTTTTTTTTTTAAAGATTTATTTTATTTATCATATGTAAGTAC
ACTGTAGCTGTCTTCTGACACCAGAAGAGGGAATCGGGTCTTGTTGCAGA
TGATTGTGAGCCACATTGTGGTTGCTGAGATTTGAACTCAAGACCTCTGA
AAGAACATTGAGTGCTCTTAAACGCTGAGGCATCTCTCTAGCCCCACTGT
GACTTTCTTTTTCCTGATGATACTGTTATAAGCAGTGTGCTAGGGAN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTTCTAAGCACCCACATTAGATGGCTCACAACTGA
CTTGGAAATCTGACATCTCTGACCTCCTTGGTCTCCTGCACTCACACACA
CACACACACACACACACACACACAATTAAAAACAAGTCCTTTTTAAAGAG
GAGAATAAGAGATAGGAAAAGAAAAAACTAATACTAATGATACTGAATTT
TTAATGGAAATATTAAATAATAGACAGGGTTCAAAAATACTTGTGAAAAT
GGCAGTAATAAGTTCTCTTCTAAGTTCCATGGTCTAGCCATCAATGAGTA
ATTACCTAGGCTTCAAGTAGTAGGTGTAATTTCCTCCCTGTTAAGTGGGC
CTTAAGTTCAGTTAGACTTGGTTGCCGCCAAGATATAAGTACCACTATTG
CTCCTCTGAGGCTATGTCACCATGATCGCCATTGCTGGGCCCACAGCATC
ACAGCTGGGTAGGGCTACTAATTACGTCTCCCCATTGACAGATGCAGAAC
ATCTTCTGATAGTATGGAACCTAGTCCTCAGAGATACCACATCAGTCAGA
ATCATTGTCTCACTAAACTATCATCACTAGTATTAAAAGATACATAAAGA
AGTTGTGTCATTAATAAATAAATAACATGAAACAAAATCTAAGTGTCTTT
CCCACTATTNCCATAATTTGTGATCATCTTATACACGTATAACATAATCA
TATAAATATGCGTTCTAAAATAACTAAACATACCCTTCN

Query= MSMg01no517_k22.g1 MSMg01no517_k22.g1 CHROMAT_FILE:
MSMg01no517_k22.g1 PHD_FILE: MSMg01no517_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
         (511 letters)



>mm_chr3_31091975_31092885
          Length = 911

 Score =  915 bits (473), Expect = 0.0
 Identities = 501/511 (98%), Gaps = 2/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctaagcacccacattagatggctcacaactgacttggaaatctgacatctctgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgttctaagcacccacattagatggctcacaactgacttggaaatctgacatctctgacc 480

                                                                       
Query: 61  tccttggtctcctgcactcacacacacacacacacacacacacacacacaattaaaaaca 120
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tccttggtctcctgcact--cacacacacacacacacacacacacacacaattaaaaaca 422

                                                                       
Query: 121 agtcctttttaaagaggagaataagagataggaaaagaaaaaactaatactaatgatact 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agtcatttttaaagaggagaataagagataggaaaagaaaaaactaatactaatgatact 362

                                                                       
Query: 181 gaatttttaatggaaatattaaataatagacagggttcaaaaatacttgtgaaaatggca 240
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaatttttaatgtaagtattaaataatagacagggttcaaaaatacttgtgaaaatggca 302

                                                                       
Query: 241 gtaataagttctcttctaagttccatggtctagccatcaatgagtaattacctaggcttc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtagtaagttctcttctaagttccatggtctagccatcaatgagtaattacctaggcttc 242

                                                                       
Query: 301 aagtagtaggtgtaatttcctccctgttaagtgggccttaagttcagttagacttggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagtagtaggtgtaatttcctccctgttaagtgggccttaagttcagttagacttggttg 182

                                                                       
Query: 361 ccgccaagatataagtaccactattgctcctctgaggctatgtcaccatgatcgccattg 420
            |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 181 tcgccaagatataagtatcactattgctcctctgaggctatctcaccatgatcgccattg 122

                                                                       
Query: 421 ctgggcccacagcatcacagctgggtagggctactaattacgtctccccattgacagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctgggcccacagcatcacagctgggtagggctactaattacgtctccccattgacagatg 62

                                          
Query: 481 cagaacatcttctgatagtatggaacctagt 511
           ||||||||||||||||| |||||||||||||
Sbjct: 61  cagaacatcttctgatactatggaacctagt 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)