XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CATGAGTGTAACAACTGCAAACTCAGACAAAGCAGATGAGGCCTTCCGTC
AGAGAAGATGTGACCAACAAAATCAGAGTTTAACAGTGAAACTGTGTAAC
CATGCCTCCCAACAGTGCCTTAAAGCAGCGATTCTCAACCTGATTCTCAG
CGATTCGACATCCTTCAGGGGTCCAATGACCCTTTCTCCGGAGTTGCCTA
AGACCATCAGAAAACAGGGATATTTATGTTATGGTTCATAACAGTAGCAA
AATTACAGTTATAAAGTAGCAACAAAAATAATGTTATGGTTGGGGGTCAC
CACAACCATATGGGGATGAGTCATGAGATTAGTGTCCAACACACTTGGTT
TATATAAGTGGCATCTTACAAAACAATAGTAAAGCTATTTGCTTGGACTT
TCATGGAATCTTATCTCTTACTAATTAGCTATGAGAGCCTAAGCAAGCAC
TAGAGTCTGGTGTTTATTTATTTATATTACATTTTTTTTATGGAAGAGGA
AGGAAACACAGGGTAATATATACACTGATCAGTGTACTAATTTATAAACC
AATTTAATTGGTGAGGCAACTTCTTTTTCTGTAGGAAAAAAGAAGATACA
GTACAAACAAATTGAACTGTCCCAGCACCTATGTTAATGGGGTTTTCAAT
CAATGTGGACCCCTGTTCTTTCTGTACAGCTCTCCCTACTTCTGCATACA
TTACTTACTGGGTT

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTTACAAATGGAGATTCTCCACAGATACTTA
AAAGTTACACTCATACAAGAAATTATCAGGGCTAAGGAAATAGAGGGGTT
GTGGTATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCCCCTGGT
GCTAGCCTTCACAAGGCTCAAAGAAGTAGCCAAAATTCTGACTAGGGTGT
GAAATCCTTAGCTGTCTTTAGCTAACCCTAGGCAGGACTGCTTTATCATT
ACTGTAAACATTTACCTGGTTCCTGTAAGTCCCTTTGAAGTCATTCCTTT
GTTTTGTGTCAGGTAACTTCAATGTACTTTGCCTGCTGTGACTTTCTACC
CCTTTTATTTTCTGTACTATATAAGACTGGTGTTCACTTTGTGACAATAC
ATTCAGATTTCTACACAATCTCGTGTGTGCATCTGTCTGTCATTCCTGCC
TTCTCCTTGCCCATCTGCACCCAGAGACCCGTCCATGCAGACAAAGGGAC
CCAGAGGGTCTAAGGCAAGACCTGAAAGAGGAAATAGAAGCAATAAAGAA
AAAACAAACTGAGGAAATCCTGGAGATGGAAAACCTAGGGAAGAGAACAG
GAACAACACATGCAAGCCTCACCAACAGAAGACAGGAGATAGAGGAGAGA
ATCTCATGCNTAGACGATACAATAGAAGAAATTGATGTCCGTCAAAGAAA
ATGTGAAAGC

Query= MSMg01no517_n09.b1 MSMg01no517_n09.b1 CHROMAT_FILE:
MSMg01no517_n09.b1 PHD_FILE: MSMg01no517_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:03 2005
         (592 letters)



>mm_chr3_102768139_102769130
          Length = 992

 Score = 1046 bits (541), Expect = 0.0
 Identities = 577/597 (96%), Gaps = 15/597 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcatcatgagtgtaacaactgcaaactcagacaaagcagatgaggccttccgtcagaga 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 ttcatcatgagtgtaacaactgcaaactcagacaaagcagatgaggccttccgtcagaga 933

                                                                       
Query: 68  agatgtgaccaacaaaatcagagtttaacagtgaaactgtgtaaccatgcctcccaacag 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 agatgtgaccaacaaaatcagagtttaacagtgaaactgtgtaaccatgcctcccaacag 873

                                                                       
Query: 128 tgccttaaagcagcgattctcaacctgattctcagcgattcgacatccttcaggggtcca 187
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tgccttaaagcagcaattctcaacctgattctcagcgattcgacatccttcaggggtcca 813

                                                                       
Query: 188 atgaccctttctccggagttgcctaagaccatcagaaaacagggatatttatgttatggt 247
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atgaccctttct---tagttgcctaagaccatcagaaaacagggatatttatgttatggt 756

                                                                       
Query: 248 tcataacagtagcaaaattacagttataaagtagcaacaaaaataatgttatggttgggg 307
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 755 tcataacagtagcaaaattacagttataaagtagcaacagaaattatgttatggttgggg 696

                                                                       
Query: 308 gtcaccacaaccatatggggatgagtcatgagattagtgtccaacacacttggtttatat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtcaccacaaccatatggggatgagtcatgagattagtgtccaacacacttggtttatat 636

                                                                       
Query: 368 aagtggcatcttacaaaacaatagtaaagctatttgcttggactttcatggaatcttatc 427
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 635 aagtggcatcttacaaaacaatagtaaagctatttgcttggactttcatggaatctcatc 576

                                                                       
Query: 428 tcttactaattagctatgagagcctaagcaagcactagagtctggtgtttatttatttat 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcttactaattagctatgagagcctaagcaagcactagagtctggtgtttatttatttat 516

                                                                       
Query: 488 attaca--ttttttttatggaagaggaaggaaacacagggtaatatatacactgatcagt 545
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attacattttttttttatggaagaggaaggaaacacagggtaatatatacactgatcagt 456

                                                                    
Query: 546 gtactaatttataaacca----------atttaattggtgaggcaacttctttttct 592
           ||||||||||||||||||          |||||||||||||||||||||||||||||
Sbjct: 455 gtactaatttataaaccattatccatacatttaattggtgaggcaacttctttttct 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)