GCGGCCGCTATACGACTCACTTATCTCAGAGGATCCGCGGAATTCAAGAT
CTTCCCGGGCTAAACTATCTGTAAAACCACACATACACACAAAAAGAAAG
GAAGGAAGTGGGGAGGTGAGAGAGAGAGAGAGAGAGAGGAAGAGAGAAAG
AAAGAGAGAGAGAGAGAGAGAGAAAGGAAGTAGAAAGAAAGAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAATGACGGATTGTTGGTTTTTTTT
ACCTCGCGCCTCTCTTCTCTTCCCTTTCTTTTTTCTTTTTTTCCCTTTTC
ACCCCCTTTTTTTTTCTTCCTCTTTCTTTCTCCCTCTCTTTTTTTTTTTT
TCTTCTCCTTTTCTTTTTCTCTTTTTCTTCTTCCCTTTTTTTTTTTTTTT
CTTTTCCCCCCTTCCCCCCTCTGCTCCTCTTTTTTTCCTTTCTTCCTTTC
TCCCCGTTTCTTTTTTCTCTCTCTCTTCTTTCTCTTATTCTTTCTTCTTT
TTCTTTTTTCCTTTTCCTTCTCTTCTTTTTCTTTTCTTTTTTTCTTTCTT
TTTTTTCCTTTCTCCCTCTTTTTTCTTTCTCCTTTTCTTTTTCTTCTCTT
CCTTTCTTCCCCTTTCTTTTCTTTTTTTTTCTTCTCCCTATTCTCCTTTT
TCTTTTTTTTTCCCTTTCTTTTTTTTCTCCTTTCCTCACCTTTTTTTTTT
CGTCCTTTTTCCCCCTTTTCTTCCCTTTTTTTCCCTTTCCTTTTTTCTTT
TTTCCCCCTTTTTTTTTTCTCTTCCTCTTTCTTTTTTCTTTCTCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCAGGTATCTTAAATTACAAAATGAAGCAA
TCAGGGTTGGAGAGATGGCTCGGCAGTTAAGAGCACGTGCCATTCTTCCA
GCGGAACCAAGTTCGGTTCACAGCACTGACACAGGCTCAGAATCATCTCC
AGCTCCAGGGGATACGGTACCCTCTCATGACCTCAACAGGCACTGCATTC
ACATGGTACACAAACATATACATGGGCAAAAATGCCACTTATACACATAA
GATAAAAATGATTACATGTTTTTAAAAATGAAGGAAACAAGTCACTCAAT
TTGACAGCGTGGTTTTAAAGTGAATATTTTAAATGTGTCACAAACACTTT
AATCCCATGGCAATGTGGGTGGATCATCTAAGTTAGGAAAATGAGCAATT
TGTCACAATGCCTTGGTAGGTTTTCTTATGTACTCTATTCAAAGCATAGA
TTTTACAGAAATTATCGTTCATTTTAAAATTTTTTATTTTTCAATTTGGG
GGTGTAAATATTTAAAATTAGTTATGTCCTGGTTGTATGTGCACCACCAC
CCCACCCAGAGCTGGCCCTCAGCTAAGCTATGGACATGGCAGGGGTGTCT
ATTTATCCAATGACTCACGTTTCTGAGTTTCCCTGCATGTCGTAGATTTG
TCCATTTCTTCAACGNTTACGTCTCCTCTTTCCAAAACACCCTGAAAGCA
GTGGATTCTTCCTAACTCCCTCN

Query= MSMg01no517_p16.g1 MSMg01no517_p16.g1 CHROMAT_FILE:
MSMg01no517_p16.g1 PHD_FILE: MSMg01no517_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:15 2005
         (542 letters)



>mm_chr3_9508974_9509915
          Length = 942

 Score =  978 bits (506), Expect = 0.0
 Identities = 531/542 (97%), Gaps = 5/542 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggtatcttaaattacaaaatgaagcaatcagggttggagagatggctcggcagtta 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 206 tccaggtatcttaaattacaaaatgaagcaatcagggctggagagatggctcggcagtta 265

                                                                       
Query: 61  agagcacgtgccattcttccagcggaaccaagttcggttcacagcactgacacaggctca 120
           |||||||||||||||||||||||||||||||||||     ||||||||||||||||||||
Sbjct: 266 agagcacgtgccattcttccagcggaaccaagttc-----acagcactgacacaggctca 320

                                                                       
Query: 121 gaatcatctccagctccaggggatacggtaccctctcatgacctcaacaggcactgcatt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gaatcatctccagctccaggggatacggtaccctctcacgacctcaacaggcactgcatt 380

                                                                       
Query: 181 cacatggtacacaaacatatacatgggcaaaaatgccacttatacacataagataaaaat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cacatggtacacaaacatatacatgggcaaaaatgccacttacacacataagataaaaat 440

                                                                       
Query: 241 gattacatgtttttaaaaatgaaggaaacaagtcactcaatttgacagcgtggttttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gattacatgtttttaaaaatgaaggaaacaagtcactcaatttgacagcatggttttaaa 500

                                                                       
Query: 301 gtgaatattttaaatgtgtcacaaacactttaatcccatggcaatgtgggtggatcatct 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 501 gtgaatattttaaatgtgtcacaaacactttagtcccatggcaatgtgggtagatcatct 560

                                                                       
Query: 361 aagttaggaaaatgagcaatttgtcacaatgccttggtaggttttcttatgtactctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagttaggaaaatgagcaatttgtcacaatgccttggtaggttttcttatgtactctatt 620

                                                                       
Query: 421 caaagcatagattttacagaaattatcgttcattttaaaattttttatttttcaatttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaagcatagattttacagaaattatcgttcattttaaaattttttatttttcaatttgg 680

                                                                       
Query: 481 gggtgtaaatatttaaaattagttatgtcctggttgtatgtgcaccaccaccccacccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtgtaaatatttaaaattagttatgtcctggttgtatgtgcaccaccaccccacccag 740

             
Query: 541 ag 542
           ||
Sbjct: 741 ag 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)