Query= MSMg01no518_c17.b1 MSMg01no518_c17.b1 CHROMAT_FILE:
MSMg01no518_c17.b1 PHD_FILE: MSMg01no518_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:29 2005
(682 letters)
>mm_chr3_155585266_155586347
Length = 1082
Score = 1181 bits (611), Expect = 0.0
Identities = 665/683 (97%), Gaps = 2/683 (0%)
Strand = Plus / Plus
Query: 1 actggactgtttctcagatactgtgaaatttaatctgggtctaaagtaatttgggatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggactgtttctcagatactgtgaaatttaatctgggtctaaagtaatttgggatctt 260
Query: 61 gaatgagagagaatggattgaggctacaatatgacctagaatggtgagtaacacgtgagt 120
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 gaatgatagagaatggattgaggctacaatatgacttagaatggtgagtaacacgtgagt 320
Query: 121 tctctgttcctaggagaaacaagagaaaaatcctgagaaactgcagaagaaaacccccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgttcctaggagaaacaagagaaaaatcctgagaaactgcagaagaaaacccccaa 380
Query: 181 aagcaattagaaaggaaaccaaataaaaaaattcactgaacctcaagcagtaagcagctt 240
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 381 aagcaattagaaaggaaaccaaataaaaaagtccactgaacctcaagcagtaagcagctt 440
Query: 241 tcccaaaggctatctaagtgcaaggcagcaagagggtcaagtgggaaagctcagagggag 300
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tcccaaaggctatctatgtgcaaggcagcaagaggggcaagtgggaaagctcagagggag 500
Query: 301 caaacacttcagatctcagcattttagtctgctaccattgggttggaaagagctgcagtt 360
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 caaacacttcagatctcagggttttagtctgctgccattgggttggaaagagctgcagtt 560
Query: 361 tccaccactgtggagcttcaacctctttgtcaaaggtcttccaagcccagatcagatgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaccactgtggagcttcaacctctttgtcaaaggtcttccaagcccagatcagatgag 620
Query: 421 cagaggccggtgtttatgagggatggagataaatgatatggcactaatcagcttcttgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 cagaggccggtgtttatgagggatggagataaatgatatggcactaatcagtttcttgcc 680
Query: 481 tctgctgcctcagtggagggtgataaggatgaggtcatcgtctgagaactgtgcta-tga 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 681 tctgctgcctcagtggagggtgataaggatgaggtcatcgtctgagaactgtgc-agtga 739
Query: 540 ggaacactcagattctgactcccttggcctgaaggctccaccatcctctgaactcaaggt 599
||||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||| |||
Sbjct: 740 ggaacactcagattcagactcccctggcctgaaggcttcaccaacctctgaactcagggt 799
Query: 600 ctggagggactgctgattgaggatgcacacacattgcctatgagcttagcaggacaggtt 659
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 800 ctggagggactgctgattgaggatgctcacacattgcctatgagcttagcaggacaggtt 859
Query: 660 acagctgctattttcattatctt 682
|||||||||||||||||||||||
Sbjct: 860 acagctgctattttcattatctt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_c17.g1 MSMg01no518_c17.g1 CHROMAT_FILE:
MSMg01no518_c17.g1 PHD_FILE: MSMg01no518_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:30 2005
(649 letters)
>mm_chr3_155749396_155750444
Length = 1049
Score = 1224 bits (633), Expect = 0.0
Identities = 645/649 (99%)
Strand = Plus / Minus
Query: 1 acatcaatataattaatttgtgtgaaacagagagactgagcaatgatttactactacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 acatcaatataattaatttgtgtgaaacagagagactgagcaatgatttactactacaaa 790
Query: 61 ctaatgagctcagaaatgtgtaaatgacttaatcaggcttaaagaatgaaaagctgaaac 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctaatgagctcagaaatgtgtaactgacttaatcaggcttaaagaatgaaaagctgaaac 730
Query: 121 ccacactatcctgtggttcttattcgccattagcttatgtgtaagaataatactctgtaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 729 ccacactatcctgtggttcttattcgccattagcttatgtgtaagaataatattctgtaa 670
Query: 181 ttagattgtaaacttcctgcaggcatacactcttgattttattgcttgcctttgtttcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttagattgtaaacttcctgcaggcatacactcttgattttattgcttgcctttgtttcca 610
Query: 241 tgtttgaatcattctgagaaatccattcccacttgaggatgagatgcctaaggcctgatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgtttgaatcattctgagaaatccattcccacttgaggatgagatgcctaaggcctgatg 550
Query: 301 actctctaccacctccttcttctctttgcctccacagtgtcatctcacctttaatgttta 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 549 actctctaccacctccttcttctctttgcctccacggtgtcatctcacctttaatgttta 490
Query: 361 attctgataaattaacagtgttcaacatctcaaactcaatttcacacttcctcaggagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 attctgataaattaacagtgttcaacatctcaaactcaatttcacacttcctcaggagtc 430
Query: 421 ctgagaaatttccacgcttcatcaagacaacaactcacaaaactaagtgtgaaataactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctgagaaatttccacgcttcatcaagacaacaactcacaaaactaagtgtgaaataactg 370
Query: 481 tgaagacgaggcagaaaacgtagatgtagcattcatctataaataagaacggtacctgtg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 369 tgaagacgaggcagaaaacgtagatgtagcattcctctataaataagaacggtacctgtg 310
Query: 541 caaatggtataggaacgggatgggcttgttcccctgacgctcaattctggcactatagat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 caaatggtataggaacgggatgggcttgttcccctgacgctcaattctggcactatagat 250
Query: 601 ttctctgtctgtctgagaaactcaaaagtgaatgtcccagggctgccag 649
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttctctgtctgtctgagaaactcaaaagtgaatgtcccagggctgccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
