Query= MSMg01no518_h01.b1 MSMg01no518_h01.b1 CHROMAT_FILE:
MSMg01no518_h01.b1 PHD_FILE: MSMg01no518_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
(690 letters)
>mm_chr3_64912532_64913621
Length = 1090
Score = 1295 bits (670), Expect = 0.0
Identities = 682/686 (99%)
Strand = Plus / Plus
Query: 5 gaattccaagctgtgttccagcaagtcagaagagcattcacgtgttaatcagtagtgtgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagctgtgttccagcaagtcagaagagcattcacgtgttaatcagtagtgtgc 264
Query: 65 tgttctcagagcaccccactaagcctccccaactcagccgtctcaactcctgcgctgcag 124
|||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct: 265 tgttctcagagcaccccactcagcctccccaactcagccttttcaactcctgcgctgcag 324
Query: 125 caaaatttggtggcatctaggcagagccccctgatggaacagccctcccagtcctgttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaatttggtggcatctaggcagagccccctgatggaacagccctcccagtcctgttcc 384
Query: 185 agtaaggagtggtcacagtgatctttccttcccactgcacacaaaggcaaggcgctcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaaggagtggtcacagtgatctttccttcccactgcacacaaaggcaaggcgctcctt 444
Query: 245 aaagggacctcccagctcttctatgcagtcgctaaccaagtaagtgctggctcaggagac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagggacctcccagctcttctatgcagtcgctaaccaagtaagtgctggctcaggagac 504
Query: 305 ccagcttttgcccgaggatgagtggggaggggtcttgagaagcctccacctccgcattct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagcttttgcccgaggatgagtggggaggggtcttgagaagcctccacctccgcattct 564
Query: 365 cctaagcacaggagcgaggtagttggcaggcatagtggatggagaccacgggtccgcggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctaagcacaggagcgaggtagttggcaggcatagtggatggagaccacgggtccgcggg 624
Query: 425 gccctgcttgctgtgagctgcttcttgggatgctcctctccagttgagcctcctgcctgt 484
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcctgcttgctgtgagctgcttcttgggatgctcctctccagttgagcctcctgcctgt 684
Query: 485 gatccagagggtgctagcagcgcatcttgcggtatgcctgcgttgctttgagccagcgcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatccagagggtgctagcagcgcatcttgcggtatgcctgcgttgctttgagccagcgcc 744
Query: 545 cagaaaccagccctctgcattcaggcacctcggactggctccaggcagggctgtgtgcag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagaaaccagccctctgcattcaggcacctcggactggctccaggcagggctgtgtgcag 804
Query: 605 tcaccatgaatgctcagctctaggcttctgcaccagcctcctgaccacatggatctggct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaccatgaatgctcagctctaggcttctgcaccagcctcctgaccacatggatctggct 864
Query: 665 gtttaatcagccgagatcacagcctg 690
||||||||||||||||||||||||||
Sbjct: 865 gtttaatcagccgagatcacagcctg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_h01.g1 MSMg01no518_h01.g1 CHROMAT_FILE:
MSMg01no518_h01.g1 PHD_FILE: MSMg01no518_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:50 2005
(615 letters)
>mm_chr3_65072053_65073068
Length = 1016
Score = 963 bits (498), Expect = 0.0
Identities = 522/532 (98%), Gaps = 7/532 (1%)
Strand = Plus / Minus
Query: 1 tgttgagtctgtgcatctctagttaacacctctagatgtcaggatttctcat-gggggaa 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 566 tgttgagtctgtgcatctctagttaacacctctagatgtcaggatttctcatggggggaa 507
Query: 60 acgagttcatgtaaagggggcattagtgggcacacatcctgctctctgccagctttcatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 acgagttcatgtaaagggggcattagtgggcacacatcctgctctctgccagctttcatg 447
Query: 120 cctcttgcctgggaatcagatagcctggttcctgctgggaatcactcctttcctcagcga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 446 cctcttgcctgggaatcagatagcctggttcctgctgggaatcactcctttcctcagtga 387
Query: 180 gctatagacagagatggtcattcctgctatgccgcttgtctctggttttggcacctcagc 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctatagacagagatgctcattcctgctatgccgcttgtctctggttttggcacctcagc 327
Query: 240 ctcctcagagacccaaccatgggctgctgtccacctgcttgtccaggcattaataacgct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctcctcagagacccaaccatgggctgctgtccacctgcttgtccaggcattaataacgct 267
Query: 300 gaaaactccttgctcctaacaacccatctcaatgtccctcttgaacttacatctgagact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaaactccttgctcctaacaacccatctcaatgtccctcttgaacttacatctgagact 207
Query: 360 ttcactatggagatgcaggatttaatgttttccatggtgacttttagtctcgctttggcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ttcactatggagatgcaggatttaatgttttccatggtgacttttagtctcgctttggcc 147
Query: 420 caccttttccttgctctgacaccatttctctcttctagaacaaaatctttattccgtgct 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 146 caccttttccttgctctgacaccatctctctcttctagaacaaaatctttattccgtgct 87
Query: 480 aaggtatattagaagtattaactttcttccttcctttctttctttctttctt 531
|||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 86 aaggtatattagaagtattaactttctt--tt--tttctttctt--tttctt 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space: 608630
Effective search space used: 608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
