Query= MSMg01no518_i14.b1 MSMg01no518_i14.b1 CHROMAT_FILE:
MSMg01no518_i14.b1 PHD_FILE: MSMg01no518_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
(630 letters)
>mm_chr3_27346510_27347540
Length = 1031
Score = 1006 bits (520), Expect = 0.0
Identities = 614/678 (90%), Gaps = 54/678 (7%)
Strand = Plus / Plus
Query: 5 gaattcttttagtgttctaactctttgttacctctgtgtatggcatatgtctgtgggtgc 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 156 gaattcttttagtgttctaactctttgttacgtctgtgtatggcatatgtctgtgggtgc 215
Query: 65 ctgtagagtgcagaagagggcactggacccactaaagctgaattttataggggcggatgg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 216 ctgtagagtgcagaagagggcactggacccactaaagctgaattttataggggcgggtgg 275
Query: 125 ttctgagccacctgatgtgggtactggaaatgaacttcgaccctttgcaagaacagtata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttctgagccacctgatgtgggtactggaaatgaacttcgaccctttgcaagaacagtata 335
Query: 185 cactgttaactacagatccatttcttgaacaacaatcttatttctcatttgtttgtttgt 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 336 cactgttaactacagatccatttcttgaacaacaatcttatttctcgtttgtttgtttgt 395
Query: 245 ttaaaacagagactcatgaggtagcactagctggcctagagcttgctatgtagaccaggc 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ttaaaacggagactcatgaggtagcactagctggcctagagcttgctatgtagaccaggc 455
Query: 305 tggcctccaagttacagagatccacttgtgcctacctctagacgcagggttgaaa----- 359
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 456 tggcctccaagttacagagatccacttgtgcctatctctagacgcagggttgaaagtcag 515
Query: 360 ----------agctaagtgactcttttctgcactcagagaaggagttccataggacatct 409
||||| |||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct: 516 gtgccaccatagctaggtgactcttttccgcactcagagcaggagttccctaggacatct 575
Query: 410 ctctctctctctctctctctctctctctc--------------------acacacacaca 449
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 576 ctctctctctctctctctctctctctctctctctctctctctctctcatacacacacaca 635
Query: 450 cacacacacacacac--------------gtgtctgcctgaccctgcaggcctcccgact 495
||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 636 cacacacacacacacacacacacacactcgtgtctgcctgaccctgcaggcctcctgact 695
Query: 496 ctgtcccctaaactgctgtcctcctggtattccccttttacctttctcatgtgtgtttga 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctgtcccctaaactgctgtcctcctggtattccccttttacctttctcatgtgtgtttga 755
Query: 556 gtccctgcccacgaggcttc---cccccccccccccccgtgtgtgtgtgtgggccccttt 612
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 756 gtccctgcccacgaggcttctcccccccccccccccccgtgtgtgtgtg--ggccccttt 813
Query: 613 ctagtgtgctgccacaga 630
||||||||||||||||||
Sbjct: 814 ctagtgtgctgccacaga 831
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_i14.g1 MSMg01no518_i14.g1 CHROMAT_FILE:
MSMg01no518_i14.g1 PHD_FILE: MSMg01no518_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
(666 letters)
>mm_chr3_27526669_27527734
Length = 1066
Score = 951 bits (492), Expect = 0.0
Identities = 511/518 (98%), Gaps = 2/518 (0%)
Strand = Plus / Minus
Query: 1 caaccttttctctgtaagagcagcgggtgctccaactgtgaacctctggtctttcaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caaccttttctctgtaagagcagcgggtgctccaactgtgaacctctggtctttcaagaa 457
Query: 61 aaccaggcattaaaacatctgggaccctttggaaagagaagcagaatgggagtgttgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaccaggcattaaaacatctgggaccctttggaaagagaagcagaatgggagtgttgtcc 397
Query: 121 tgccaactgtgctgatggtacagccggctgagccagtgttcgcagaactcacctgtggct 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 396 tgccaactgtgctgatggtacagccggctgagccagtgtttgcagaactcacctgtggct 337
Query: 181 tcttagctcttatacttttgcaagctttggaatctggctgtagggaggacaggtgaacag 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcttagctcttacacttttgcaagctttggaatctggctgtagggaggacaggtgaacag 277
Query: 241 ggcaagatcacaggtgttttcttctttcctgtaatatctttgtggtctacctacttgatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggcaagatcacaggtgttttcttctttcctgtaatatctttgtggtctacctacttgatt 217
Query: 301 cttaacccagggaccttttgtttgtttgtttgttttttgttttagtattttttaaaaatt 360
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 216 cttaacccagggaccttttgtttgtttggtt--tttttgttttagtattttttaaaaatt 159
Query: 361 gatttattttatgtatacgagtgctctatcttcatgtacacctgtgtgccagaagaggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gatttattttatgtatacgagtgctctatcttcatgtacacctgtgtgccagaagaggcc 99
Query: 421 atcagatcccattacagatggttgtgagccaccatgtggttgctggaaattgaactcagg 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 98 atcagatcccattacagatggttgtgagccaccatgtggttgctgggaattgaactcagg 39
Query: 481 agctctggaagagcagtcagtgctcttaaccactgagc 518
|||||||||||||||| |||||||||||||||||||||
Sbjct: 38 agctctggaagagcagccagtgctcttaaccactgagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
