Query= MSMg01no518_k10.b1 MSMg01no518_k10.b1 CHROMAT_FILE:
MSMg01no518_k10.b1 PHD_FILE: MSMg01no518_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:07 2005
(690 letters)
>mm_chr3_122642194_122643283
Length = 1090
Score = 1274 bits (659), Expect = 0.0
Identities = 680/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcc-actatcttaaaaataggtgtgttatttttctctgctgctgacatagacatcc 63
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaactaacttaaaaataggtgtgttatttttctctgctgctgacatagacatcc 263
Query: 64 acatgtcttgcagggaattctggctccatgttctttgtaaatctgatagtccgattttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acatgtcttgcagggaattctggctccatgttctttgtaaatctgatagtccgattttaa 323
Query: 124 cacttggcatagtagagacctcaatattaaggcaaacaaattaactaaggttaattttga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacttggcatagtagagacctcaatattaaggcaaacaaattaactaaggttaattttga 383
Query: 184 ttttgtaaaaactccgtaacacaatattcaagaagttgaaatatatgccttatctgaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttgtaaaaactccgtaacacaatattcaagaagttgaaatatatgccttatctgaaaa 443
Query: 244 catggttcattttcagaacaggctcacagagaaatataacttaaatccacctagactgtg 303
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 catggttcattttcagaacaggctcacagagaaatataacttaaatctgcctagactgtg 503
Query: 304 caatgttcactcattattgtagtgagatttaaatatataatggtaattattatagttttc 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caattttcactcattattgtagtgagatttaaatatataatggtaattattatagttttc 563
Query: 364 aacttacagacttatttcaacttataattacaaatgctaagcatgcaagaacaggaatct 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 aacttacagacttatttcaacttataattacaaatgctaagcattcaagaacaggaatct 623
Query: 424 aaccactgacttaatttacaaataaaacaatattaaattatttcagaaatattattaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaccactgacttaatttacaaataaaacaatattaaattatttcagaaatattattaaac 683
Query: 484 actaactgtctaaaaatatttttcccatataccaaaaggaacttagtatacagtaatctg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actaactgtctaaaaatatttttcccatataccaaaaggaacttagtatacagtaatctg 743
Query: 544 tgctatgatacctaaattttgtgatgttataaactgacaggaatcagtaacttccttttt 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgctacgatacctaaattttgtgatgttataaactgacaggaatcagtaacttccttttt 803
Query: 604 cactgggattacattttaaagaaaaaaacagatatttttatttattataaaacaattcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cactgggattacattttaaagaaaaaaacagatatttttatttattataaaacaattcca 863
Query: 664 atagtacaagtttagtttttaaaaatg 690
|||||||||||||||||||||||||||
Sbjct: 864 atagtacaagtttagtttttaaaaatg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_k10.g1 MSMg01no518_k10.g1 CHROMAT_FILE:
MSMg01no518_k10.g1 PHD_FILE: MSMg01no518_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:07 2005
(357 letters)
>mm_chr3_122775454_122776210
Length = 757
Score = 663 bits (343), Expect = 0.0
Identities = 355/361 (98%), Gaps = 6/361 (1%)
Strand = Plus / Minus
Query: 1 cttttcccagaaagaattattcgtgagccttacaagtcttctttgggggatatttcttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttttcccagaaagaattattcgtgagccttacaagtcttctttgggggatatttcttcc 319
Query: 61 atacacagtagtcctagagcacatgttagaaagcaagggtctgtgttttgtgtgcccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atacacagtagtcctagagcacatgttagaaagcaagggtctgtgttttgtgtgcccctg 259
Query: 121 ccttcagtttgatgaagcaactgttactgaagcaagacagaaaactaaacaaacaagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ccttcagtttgatgaagcaactgttactgaagcaagacagaaaactaaacaaacaagcct 199
Query: 181 gggcataatggactatgtttatgatcccagcactggagaaggaagtggagtcaggaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gggcataatggactatgtttatgatcccagcactggagaaggaagtggagtcaggaacat 139
Query: 241 aaaagttcaaggtcagttgggactacttggtaaagcagaggtgatcttggactatgtact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 aaaagttcaaggtcagttgggactacttggtaaagcagaggtgatcttggactatgtact 79
Query: 301 tagatcctttctcaaaagaacggagagagagggagaggngggag-gg----ggggaaggg 355
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 78 tagatcctttctcaaaagaacggagagagagggagagg-gggagaggaagaggggaaggg 20
Query: 356 g 356
|
Sbjct: 19 g 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
