BAC Information

Click to search

BAC

Clone NameMSMg01-519A24
Chromosome3 (Build37)
Map Location 74,462,276 - 74,462,620
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519A24.T7 (MSMg01no519_a24.b1)MSMg01-519A24.TJ (MSMg01no519_a24.g1)
ACCAG590424AG590425
length761743
length of high quality
(start - end)		658 (59 - 716)80 (62 - 141)
definitionCHROMAT_FILE: MSMg01no519_a24.b1 PHD_FILE: MSMg01no519_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005CHROMAT_FILE: MSMg01no519_a24.g1 PHD_FILE: MSMg01no519_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
ACATTACAAACCATTTATTTTGAGGATAATAACTAGAAAATTAGCATATT
TTATTTTACTATAATCTAAAATGTCAAAGATTACTAAAAATGCTTATATT
TCATAAAATTATGCTTTGAAAGATAAATATATTTATCAAAGTCTTGACAA
TATCATCACTATGCTAGAGAAATTAAGCCACAATAAGATATTGCTTCTCC
TAGGGTGGCTTTAATACTAATAAGGAAAATGCTAAACATTGTCATGATGT
AGATAAATTATAAGACCAACAGAATGCTAGTGGGAATAAAACATTGGTGA
TCCATGAACCATACAGAAAGATTGTGGATGTTTTCTTACAATGTTAAAGC
AAAGGTTATCTTTTGATAATTCCACCCCACTACTAAGTATATATTCAAAA
GAATTGAAAACTATTATTCAAAGAAATATATGTCCACAAAGTGTTTACAG
TAGTTAAACACTGCAGCTATCTATATATATACACATAGAAATATATACAC
ATTAATATTACATCATACATATGCTAATATTCTATTATATATGTTAATTA
CTCCAGTGTACAGGCCTAAATTGGTGTTCTATTACATGTTGTTTAACTAA
AGTTGTATGTCTTCATTCCCAGAAAATATTCACAAATTTCTGGTTGATAA
CAATATATTTTAATGTTCAAAACAAATTTATTAGATAATACTTGAATTTA
TGCTAAGAAAA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATTCAGGACAGGGAAGCAGGAGTGGGGGGTTGTTGATCAGGC
GGAGGGAGGATGGGATAGGGGGTTTTTGANNGGGAAACCCGGACAGAGGA
TAACAGTTGAAATGTAAATAAAGAAAATATCTAATAAAAAATAGAAAAAA
TTATACATATCAGTCTTTTCTTTTATTAGGTGTAATACATTTTAATTTTA
AAATATAAATGTCATCTATAAAACATATTCCTGAAAAAAAATCACGCTAT
ACTAATGTTTTTTTTTATGATGTGAATGTAGCTAACTGATAATCATCTTT
TTTAACGTGATACAAAACAGGGCGGTGTGAGTCATGGCTATAATACCACT
ACTCCCCAGGTTGAATTTTTAACCACACCATAACTTCTAGTTTATCTTGT
GCCGCTCTACCTTAATACTTGCCAAGACATGCTAAATGACTATTATTACA
CTGATTCTATGTATTACATCTCCTGCTCACTCTTGTGCCATACCCGCATT
GCACCGTTAATTACCACATTCCTCCTCCCACATAGTATTTGTATAGCCCA
GGCCTTCCTCTGCGATAAACCCTGCCTATAACGCACCCCTTATTTCTTTT
TGATACCTTTTTCCTACCTCCACACACCCTGTTCCCTCCCAATGCTCCGT
CACCTTTCTTCCCTTATAAAACTCCACCAACTATACCGCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_a24.b1 MSMg01no519_a24.b1 CHROMAT_FILE:
MSMg01no519_a24.b1 PHD_FILE: MSMg01no519_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:40 2005
         (658 letters)



>mm_chr3_74462276_74463333
          Length = 1058

 Score =  659 bits (341), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccatttattttgaggataataactagaaaattagcatattttattttactataatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaccatttattttgaggataataactagaaaattagcatattttattttactataatcta 286

                                                                       
Query: 61  aaatgtcaaagattactaaaaatgcttatatttcataaaattatgctttgaaagataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaatgtcaaagattactaaaaatgcttatatttcataaaattatgctttgaaagataaat 226

                                                                       
Query: 121 atatttatcaaagtcttgacaatatcatcactatgctagagaaattaagccacaataaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atatttatcaaagtcttgacaatatcatcactatgctagagaaattaagccacaataaga 166

                                                                       
Query: 181 tattgcttctcctagggtggctttaatactaataaggaaaatgctaaacattgtcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 165 tattgcttctcctagggtggctttaatactaataaggaaaatgctaaacattggcatgat 106

                                                                       
Query: 241 gtagataaattataagaccaacagaatgctagtgggaataaaacattggtgatccatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtagataaattataagaccaacagaatgctagtgggaataaaacattggtgatccatgaa 46

                                                        
Query: 301 ccatacagaaagattgtggatgttttcttacaatgttaaagcaaa 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccatacagaaagattgtggatgttttcttacaatgttaaagcaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |