Query= MSMg01no519_d19.b1 MSMg01no519_d19.b1 CHROMAT_FILE:
MSMg01no519_d19.b1 PHD_FILE: MSMg01no519_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:54 2005
(609 letters)
>mm_chr3_101955723_101956722
Length = 1000
Score = 1058 bits (547), Expect = 0.0
Identities = 587/605 (97%), Gaps = 9/605 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccaggttacgcacctggccatgtctgaaggctcagagagacagaaagacaggc 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagggaacgcacctggccatgtctgaaggctcagagagacagaaagacaggc 264
Query: 65 aaagccagacaatttgcatgctcaaatgcttttatcctaatgctgtttcacggtcaaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagccagacaatttgcatgctcaaatgcttttatcctaatgctgtttcacggtcaaaag 324
Query: 125 aatcagagactcaagataaaagctctggaggttgttacatttgtccctgggagttaattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcagagactcaagataaaagctctggaggttgttacatttgtccctgggagttaattc 384
Query: 185 aaaagtgtctttatctcgctgaatgaaacattggacttttccgagaaagccaccttgccg 244
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 385 aaaagtgtctttatctcgctgaatgaatctttggacttttctgagaaagccaccttgccg 444
Query: 245 gcactgcctcaggctccaggaatctctctatggggctggaaaactccgttccactctaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcactgcctcaggctccaggaatctctctatggggctggaaaactccgttccactctaat 504
Query: 305 ccaccagtgaagcaagcacgtttcataggcaaagcaagttaggtagaaatgggacagatg 364
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaccagtgaagca----cgtttcataggcaaagcaagttaggtagaaatgggacagatg 560
Query: 365 gagtcaaggggctcttgttccatcaggagtttcccactctctgtctacccccagaatctt 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 gagtcaaggggctcttgttccatcaggagtttcccactctctgtctaccctcagaatctt 620
Query: 425 atcttaattcccaatgcagggataatgtgagcactatcctgccatctctgtccatcttcc 484
| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 621 a-----attcccaatgcagggataatgtgagcactatcctgccatctctgtctatcctcc 675
Query: 485 cctccaacagcacaaccaaagtataacttacacacggtggggcagaggaaaaacaggtct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cctccaacagcacaaccaaagtataacttacacacggtggggcagaggaaaaacaggtct 735
Query: 545 tcttttctttccttttgacccttgtattctattttatgtgtactctgcctgcagtccaaa 604
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 736 tcttttctttccttttgacccttggattctattttatgtgtactctgcctgcagtccaaa 795
Query: 605 gggta 609
|||||
Sbjct: 796 gggta 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1000
Length adjustment: 10
Effective length of query: 599
Effective length of database: 990
Effective search space: 593010
Effective search space used: 593010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_d19.g1 MSMg01no519_d19.g1 CHROMAT_FILE:
MSMg01no519_d19.g1 PHD_FILE: MSMg01no519_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:54 2005
(205 letters)
>mm_chr3_102119044_102119648
Length = 605
Score = 348 bits (180), Expect = e-100
Identities = 198/204 (97%)
Strand = Plus / Minus
Query: 1 tgcctctgtcacctacaggcctgacaatgttgccatgtatctaaacttaagatgcctctt 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 339 tgcctctgtcacctacaggcctgacaatcttgccatgtatctaaacttaagatgcctctt 280
Query: 61 agttaaaaaaatacagactaacaatagtgcctatctcaccacaaagagactcacatgaca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agttaaaaaaattcagactaacaatagtgcctatctcaccacaaagagactcacatgaca 220
Query: 121 ccttaaaagtctaattcttatgccaggttcaggaagcgggagtgggtatgttggggagta 180
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct: 219 ccttaaaagtctaattcttatgccagggccaggaagtgggagtgggtaggttggggagta 160
Query: 181 gggcggaggggatgggtatagtgg 204
||||||||||||||||||||||||
Sbjct: 159 gggcggaggggatgggtatagtgg 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space: 117609
Effective search space used: 117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
