Query= MSMg01no519_f02.b1 MSMg01no519_f02.b1 CHROMAT_FILE:
MSMg01no519_f02.b1 PHD_FILE: MSMg01no519_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:00 2005
(678 letters)
>mm_chr3_35216151_35217227
Length = 1077
Score = 1222 bits (632), Expect = 0.0
Identities = 666/682 (97%), Gaps = 10/682 (1%)
Strand = Plus / Plus
Query: 5 gaattctatcatcgtggccctggaatgatgggtttgtggtcgtgagcactttatatctct 64
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 196 gaattctatcaccgtggccctggaatgatgggtttgtgatcttgagcactttatatctct 255
Query: 65 cttctgagccttagtctgtttacctgtaatggagcatggggtagttgcctctctggctca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttctgagccttagtctgtttacctgtaatggagcatggggtagttgcctctctggctca 315
Query: 125 caagaatgagcacagatacagtggggcagctcctacagtgctggatgaatggagccgcca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 caagaatgagcacagatacagtggggcagctcctacagtgctggatgaatggagccgcca 375
Query: 185 tcatcacacaacgcc--------ccccc-ccatcatcttctttgtgattctgccgtgtag 235
||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 376 tcatcacacaacgcccccgccctcccccaccatcatcttctttgtgattctgccgtgtag 435
Query: 236 tataatcattagcgcatactaaagtttgttgtgtaaaccacgggatgtattttacatggg 295
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 436 tataatcattagcgcatactaaggtttgttgtgtaaaccacgggatgtattttacatggg 495
Query: 296 gtcttgtcatcgacaaagcaggccactttgttttccttggcctggtttgcacctgacttt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gtcttgtcatcgacaaagcaggccactttgttttccttggcctggtttgcacctgacttt 555
Query: 356 cctccctctgtgacacttgacgacaactcagttttcaaatgagcttcgcctttctgatgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctccctctgtgacacttgacgacaactcagttttcaaatgagcttcgcctttctgatgg 615
Query: 416 gttctcctcccctgagaactcaggacaaattcttagcacgaacgcttatggtagcaatca 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 616 gttctcctcccctgagaactcaggacaaattgttagcacgaacgcttatggtagcaatca 675
Query: 476 agacaaatgtcaagccatacctgaccagtgtcctgaggggttctatgtgtgaaacggcac 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 676 agacaaatgtcaagccatacctgaccagtgtcctgaggggttctatgtgtgaaatggcac 735
Query: 536 ttttaaggatgaaatggtttatttcttgcaactcaactcactcacctgtcccttaaagac 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ttttaaggatgaaatggtttatttcttgcaactcaactcactcacctgtcccttaaagac 795
Query: 596 tgggttttctgtggcttcctgaacatttttttttaaagcctttctacatctgcacaaaac 655
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 796 tgggttttctgtggcttcctgaacatttttttt-aaagcctttctacatctgcacaaaac 854
Query: 656 aagcagttgttgtcatcaccat 677
||||||||||||||||||||||
Sbjct: 855 aagcagttgttgtcatcaccat 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_f02.g1 MSMg01no519_f02.g1 CHROMAT_FILE:
MSMg01no519_f02.g1 PHD_FILE: MSMg01no519_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:00 2005
(645 letters)
>mm_chr3_35370028_35371071
Length = 1044
Score = 1145 bits (592), Expect = 0.0
Identities = 635/654 (97%), Gaps = 11/654 (1%)
Strand = Plus / Minus
Query: 1 caaggccatagttctc--------atatcaagaatgcctgtctgtattgcttctgacatg 52
||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1024 caaggccatcgttctcatgacgaaatatcaagaatgcctgtctgtattgcttctgacatg 965
Query: 53 gactctgctctcctggttgaagtgtgacttgttaggtttctctgctccgaggttggtctt 112
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 964 gactctgctctcctggttgaagtgtggcttgttaggtttctctgctccgaggttggtctt 905
Query: 113 tccttccttcatttctccaccatgttctacagagagaagcaactacaaagtctgtactta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tccttccttcatttctccaccatgttctacagagagaagcaactacaaagtctgtactta 845
Query: 173 cctgtggccctcagggtgtaacatctacacagacagtcacttttctgaaagaacgtttga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cctgtggccctcagggtgtaacatctacacagacagtcacttttctgaaagaacgtttga 785
Query: 233 gaagccttccctttttctttcttccttgtacagcaagctttcactggctgttgaatgtgt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaagccttccctttttctttcttccttgtacagcaagctttcactggctgttgaatgtgt 725
Query: 293 gaattgcttctctttgcctctggagttctgtgactaccaacacgtttctccacacctggc 352
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaactgcttctctttgcctctggagttctgtgactaccaacacgtttctccacacctggc 665
Query: 353 tttcttttcattttttttattcagtcgtttgtatcaggaatggcacagagatatatcact 412
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 664 tttcttttca-tttttttattcagtcgtttgtatcaggaatggcacagagatatattgct 606
Query: 413 ttatttttcttatttgaactatcatctaataccacttagttttgtttcagttgtccctgg 472
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 605 ttatttttcttatttgaactatcatccaataccacttagttttgtttcagttgtccctgg 546
Query: 473 gccattggatgctatgtagttctatattgtgttacttaggcacaagcgcattgctgtgtc 532
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 545 gccattggatgctatgtagttttatattgtgttgcttaggcacaagcgcattgctgtgtc 486
Query: 533 tatctatgctttctcattataagttttctcttttcttttgttttcagctcaaggtacagt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tatctatgctttctcattataagttttctcttttcttttgttttcagctcaaggtacagt 426
Query: 593 tcag-agatagagcatcaacctagcacgtacaagcctggatgattcctggaaac 645
|||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcagca-atagagcatcaacctagcacgtacaagcctggatgattcctggaaac 373
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
