BAC Information

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BAC

Clone NameMSMg01-519G23
Chromosome3 (Build37)
Map Location 90,244,204 - 90,244,410
singlet/doubletsinglet
Overlap genenone
Upstream genePbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3
Downstream geneNpr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519G23.T7 (MSMg01no519_g23.b1)MSMg01-519G23.TJ (MSMg01no519_g23.g1)
ACCAG590708AG590709
length747768
length of high quality
(start - end)
223 (23 - 245)572 (66 - 637)
definitionCHROMAT_FILE: MSMg01no519_g23.b1 PHD_FILE: MSMg01no519_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:09 2005CHROMAT_FILE: MSMg01no519_g23.g1 PHD_FILE: MSMg01no519_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCACTATG
CATTACCAGGCTGGCCTTGAACTCTCGGGAGATCAGCCTGCCTCTGCCTC
TGCTTCTAAAGTGCTGGGATTGAAGGTATGTACCACTACACCTCATGTTT
GCTTTTATCTTTTTAAAGACCATAATAGTTTTTTTTTGCATACATTATAA
TATCTGCTAAGGTTATACTTGTTGGGGTGGTCCAAAATGGGGTCAACCCT
AANGAAAAAACCCCCAAAGGAAAATGGGGTGGGAAATTGGGATAACACAC
CCCCCCCAAATTGTGGGTTGTGGGGTGGGGGTGAAAAAATACCTCCTCCG
CGCGGGGTGTCCTCCCCTCTCCACCCCTAACTAATTTTTTTTTATTCTCT
CTCCCATTGTTCTGGGGGGGTGGTTGGTTTTTTAGTCTATAATGGGTTGT
TTTACACCCCTATATTTATTTTTTTTTTTCTCCCCTTACGTTTCTATCCT
TATATTTTTCCCGCATTTGTTCATTTACTTTACTTTGCGGCCCTTATTTT
TCTTATCCATTTTCGTATTAAACTCAAAAGGTTATCTCCTTCCAGCTATT
TTTTCTTTCCCCGCTCTTGCTCTACCTTTTTACCTTTTTATTTTTACTTA
ATGGAGGATGATTGTTTGCGTTATCCCGACGAGATTAATGCCTCAATATT
TCATTTTTTTTCCCGCCCTACATTCTTTCGTTTTTATATTCTATTTT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTCAAAAATCTCTATTGTATGATCCTAGCCAT
TAGGAGGCTGAGACAGAATGATTGATAATTCCAGGTTAATCTGCCTTACA
AAGTGAAAGGCTGCTGGGCAAAACAAAGCAACCCTTCCCAAAGAAACAAA
ATCTGTTTTTGAATAGCTCTTATCAGTACACTCTTTGTTTTGAGACAAAA
TTTCACTCTGTAGTCCAGGCTGGTCTGGAACTCACTCTAGTCCAGGATGG
CCTTGAATTTATAGCAAGCTCCCTGCTTCAGTCTCTAGTGCTGGAATTAT
GTGTTTTGAGTCACCATGCCATGCCTAGTTTTGAATATGTTTTTCCTTCT
TTCAATAAAGACTGAGACAGACACAGATACTTGTACCTAACCATTGGACT
GAAGTTGGGGACTCCTATGGTTGAATTAGGGGAAGGATTTAAAAATCTGA
AGGGGAAGGTGACCCCAGAGGAAGACCAGCAGACTCAACAAACCCAGACC
CCTGGGAGCTCCCAGAGACTGAGCCACCAACCAGGCAGCATACATGGGCT
GATCTGAGGCCCCTGGCACATATATACCACACTGCCTGGTTTGGCCTCAG
TGTGAGAAGATGGACCTAATCCCTCAGAGACTTGAGGCCCCANGGAAGGG
GGATGCCTGTTGGGTGGGGATCATCCTCTANGAGGTTAAGGGGAAGAGAA
ATGGGATGAGAGACTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_g23.b1 MSMg01no519_g23.b1 CHROMAT_FILE:
MSMg01no519_g23.b1 PHD_FILE: MSMg01no519_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:09 2005
         (223 letters)



>mm_chr3_90243884_90244506
          Length = 623

 Score =  364 bits (188), Expect = e-105
 Identities = 203/208 (97%), Gaps = 1/208 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcactatgcattaccaggctggccttgaactctcgggagatcagcctgcctctgc 75
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggaattcactatgca-gaccaggctggccttgaactctcgggagatcagcctgcctctgc 469

                                                                       
Query: 76  ctctgcttctaaagtgctgggattgaaggtatgtaccactacacctcatgtttgctttta 135
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 468 ctctgcttctaaagtgctgggattgaaggtatgtaccactacacctcatgtttgttttta 409

                                                                       
Query: 136 tctttttaaagaccataatagtttttttttgcatacattataatatctgctaaggttata 195
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 408 tctttttaaagaccataatggtttttttttgcatacattataatatctgctaatgttata 349

                                       
Query: 196 cttgttggggtggtccaaaatggggtca 223
           ||||||||||||||||||||||||||||
Sbjct: 348 cttgttggggtggtccaaaatggggtca 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)