XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTATTATCAGTTGTGGTGAAGAATTATTCTTTGGAGTGAGAAAGAGT
GATCATTTATTTTAAACCCAGCAGTGGATTGGTTCTTCTAAGCCTGTGGC
CATCAGGCCAAATACATTCAAAATTCCTAGCAGAAATGTTAATAGTAAAG
TGTGGCAAATATCATAATCACCAGGCTACACCCTTAAACAGAATACTGGA
CTCAATCTCTAGCATTGCAGAATCAGGAGGTGTAGGTAGAGGTCTGGATC
TTTGCCTTTCTCACAGGTTCTAGGATGATAGAAAGCTACAACCTCAGGGC
CACATTTTCAGGAACATTATTTTTCTGTACATTGGTTATGAGGAGGGGCC
TTGTGGTCCTAAGATCACAAAGCAGAGTTTGGGGAGGTAGTCCTGCTTGT
TTCTCCAGTTGAATTCTTTCTGTGGTCATGGCAGCACAGTTAGAATAGAA
AATTTGTTCAATTATCTGGAATTTGGGGACATTAGCCGGTGCTAAATTGA
AGGCACAAATTTTTTTCTAAAGGGGGAAATTTCTCCGGGGGTTTTTAATA
TTTTTTTTCCCCCCCCCCNCCCCCGAACCATCTTTCTTTTATCCCTCTCC
CTCTTCGCTTTTTTTCCCTTTACCTTCTTTTCCCCCCCCCCCCTTTCCCC
CCTTTCCTTTTTCTATTCTCCCT

GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCATGATGTACACCCTAGCAAGGATC
CAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCTTTTAACTGTACC
TGGCCCAACAGCAGTGTGCCTTACAATGTGGACCACAGAGTGAATATGAC
TGGTAAAGAAAACAGACTGTATGACATGTCTGATCAGCTCTGCACTGGAG
AGGAGAAGCTGGAAGATCTGAAAAACACCTATCTGGATACATCTCAGCTA
AGAATCACAAACAATGTCAGACAAGCTGTATATCTAATGGCTTATGCCCT
GGATCGTTTAAGCACTTGTGACTTATTGGAAGAACAGAGGAATGATACAA
CATGTTCACATATACCTGACTTTGAGCCCAAAGAGGTACGTTATTTGACC
CTATTATACAGCATGGGNGTAAAACCCAAGGTTTTGCTGACAATTATCAT
TACCTTTTGAAAATTGCCGAAATTTGCTTTTCCAAATGATTTTTTAAAAC
ATCCAAAATTTTTGTCGCGGAGAGAGACTTTNTNNNNTNNNNNNNNNNCN
NTTTCTTTATTTATGTCTCATTGTTTAATTTCACCTCCCTTTTTTCTCTT
TCCTTATTTTTTTTTATTTTTCTTTATCTATTATTTCGCTACTATTCTTT
TGCATTTCAATCTTTATTGTTCCTTTTATTTTCATTCCG

Query= MSMg01no519_h07.b1 MSMg01no519_h07.b1 CHROMAT_FILE:
MSMg01no519_h07.b1 PHD_FILE: MSMg01no519_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:10 2005
         (455 letters)



>mm_chr3_63869645_63870499
          Length = 855

 Score =  638 bits (330), Expect = 0.0
 Identities = 423/466 (90%), Gaps = 24/466 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtattatcagttgtggtgaagaattattctttggagtgagaaagagtgatc 64
           |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 199 gaattctttggactatcagttgtggtgaagaattattctttggagtgagaaagaatgatc 258

                                                                       
Query: 65  atttattttaaacccagcagtggattggtt-cttctaagcctgtggccatcaggccaaat 123
           |||| |||| ||||||||||| |||||||| | |||||||||||        ||||||||
Sbjct: 259 atttcttttgaacccagcagtagattggttgc-tctaagcctgt--------ggccaaat 309

                                                                       
Query: 124 acattcaaaattcctagcagaaatgttaatagtaaagtgtggcaaatatcataatcacca 183
            ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 310 gcattcaaaattcctatcagaaatgttaatagtaaaatgtggcaaatatcataatcacca 369

                                                                       
Query: 184 ggctacacccttaaacagaatactggactcaatctctagcattgcagaatcaggaggtgt 243
           ||||| ||||||||| ||||||||||||||| | ||||| |||||||||||||||||| |
Sbjct: 370 ggctatacccttaaatagaatactggactcagtttctagtattgcagaatcaggaggtat 429

                                                                       
Query: 244 aggtagaggtctggatctttgcctttctcacaggttctaggatgatagaaagctacaacc 303
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 430 aggtagaggtctggatctttgcttttctcacacgttctaggatgatagaaagctacaacc 489

                                                                       
Query: 304 tcagggccacattttcaggaa----------catta-tt---tttctgtacattggttat 349
           |||||| ||||||||||||||          ||||| ||   ||||||||||||||||||
Sbjct: 490 tcagggtcacattttcaggaatattagtgaacattaattacttttctgtacattggttat 549

                                                                       
Query: 350 gaggaggggccttgtggtcctaagatcacaaagcagagtttggggaggtagtcctgcttg 409
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaggagtggccttgtggtcctaagatcacaaagcagagtttggggaggtagtcctgcttg 609

                                                         
Query: 410 tttctccagttgaattctttctgtggtcatggcagcacagttagaa 455
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tttctccagttgaattctttctgtggtcatggcagcacagttagaa 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)