Query= MSMg01no519_k18.b1 MSMg01no519_k18.b1 CHROMAT_FILE:
MSMg01no519_k18.b1 PHD_FILE: MSMg01no519_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:27 2005
(592 letters)
>mm_chr3_79183414_79184406
Length = 993
Score = 1023 bits (529), Expect = 0.0
Identities = 574/589 (97%), Gaps = 1/589 (0%)
Strand = Plus / Plus
Query: 5 gaattc-cagcgtgaaactcagcgagcgctctgagctaagcaagatgtcttctgaaagca 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcgtgaaactcagcgagcgctctgagctaagcaagatgtcttctgaaagca 264
Query: 64 ttccttctatcattaacattttggtatgtttaagaaaccatgtgagaaagatgttcgata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ttccttctatcattaacattttggtatgtttaagaaaccatgtgagaaagatgtttgata 324
Query: 124 aacaaaacgcctcagggaaaattgcaaaacaaattttctaacactggtttttggtacagt 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacaaagcgcctcagggaaaattgcaaaacaaattttctaacactggtttttggtacagt 384
Query: 184 atgaatctcagaatccaattaattaaaaaacatactaaagtctctaaattgaactgttct 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 385 atgaatctcagaatccaattaattaaaaaacatactaaagtctctaaattgagctactct 444
Query: 244 taaattcccatttctacatgcaccaaagcataggaatctatatttcaaatttttggttcc 303
||| ||||||||||||||||||||||||| |||| ||||||||| |||||| ||||||||
Sbjct: 445 taagttcccatttctacatgcaccaaagcgtagggatctatattccaaattcttggttcc 504
Query: 304 tctttggcattcctaggattatttacggtcactgtggtgtcctctgtgttctagcagaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctttggcattcctaggattatttacggtcactgtggtgtcctctgtgttctagcagaga 564
Query: 364 gccacactggagaaatcgcaactggcagtcaatgtttaactggtactccacctggacatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccacactggagaaatcgcaactggcagtcaatgtttaactggtactccacctggacatt 624
Query: 424 ccattctgtttcaagctttgttcttcaataattgattagaggagacacgaaggaggtagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccattctgtttcaagctttgttcttcaataattgattagaggagacacgaaggaggtagc 684
Query: 484 tttgtcttgtccagtggtgttttgagtgattttatgcagaaagacaagacctgctgttag 543
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 685 tttgtcttgtccagtggtgttttcagtgattttatgcagaaagacaagaaatgctgttag 744
Query: 544 ggttacagaaacacaaacccaggaaaaagagaaagtggggggctagatg 592
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 745 ggttacagaaacacaaacccaggaaaaagagaaagtggggggcaagatg 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 993
Length adjustment: 10
Effective length of query: 582
Effective length of database: 983
Effective search space: 572106
Effective search space used: 572106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_k18.g1 MSMg01no519_k18.g1 CHROMAT_FILE:
MSMg01no519_k18.g1 PHD_FILE: MSMg01no519_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:27 2005
(556 letters)
>mm_chr3_79299052_79300007
Length = 956
Score = 1017 bits (526), Expect = 0.0
Identities = 545/558 (97%), Gaps = 12/558 (2%)
Strand = Plus / Minus
Query: 1 catgcctcctctgtgtgatttctctgtatgggaaagacttaagtgagtagccatggtgtg 60
||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 828 catgcctcctctgtgtg----------atgggaaaggcttaagtgagtagccatggtgtg 779
Query: 61 a--gtgtgtgtgtgtgtgtgtgcacgcgcgcacgcatgcatgtgcgctcatgttttaaaa 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agtgtgtgtgtgtgtgtgtgtgcacgcgcgcacgcatgcatgtgcgctcatgttttaaaa 719
Query: 119 cccactaactggtctgagtgcttccggatcttccctgtagtgcatcgcagagcatccagt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cccactaactggtctgagtgcttccggatcttccctgtagtgcatcgcagagcatccagt 659
Query: 179 agcatgagctggagctgatgggtcagtcaggatgagcatctggtcactgttgatttccaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agcatgagctggagctgatgggtcagtcaggatgagcatctggtcactgttgatttccaa 599
Query: 239 gagcctgcatcctgggttataactctacaatcgttgccagagagctttctgtccccaagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gagcctgcatcctgggttataactctacaatcgttgccagagagctttctgtccccaagc 539
Query: 299 aagcgctgtttcagtttgtgtactccaaaacagcttgtgcagcacacatggacctggaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aagcgctgtttcagtttgtgtactccaaaacagcttgtgcagcacacatggacctggaga 479
Query: 359 gaggatgaaaaagtatctggctatacagttggttctctgaaacattcccaagcattctct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaggatgaaaaagtatctggctatacagttggttctctgaaacattcccaagcattctct 419
Query: 419 gttgtggaataatacttaaaagataatcaggacactggtttgtttcactgtggagagctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gttgtggaataatacttaaaagataatcaggacactggtttgtttcactgtggagagctg 359
Query: 479 atccaggactacacactaaagtccagtggctttagatgctcgaagagatgtgtgatggag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atccaggactacacactaaagtccagtggctttagatgctcgaagagatgtgtgatggag 299
Query: 539 acagtgagatgtggcctc 556
||||||||||||||||||
Sbjct: 298 acagtgagatgtggcctc 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
