BAC Information

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BAC

Clone NameMSMg01-519N24
Chromosome3 (Build37)
Map Location 7,239,304 - 7,239,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
Downstream genePkia, LOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519N24.T7 (MSMg01no519_n24.b1)MSMg01-519N24.TJ (MSMg01no519_n24.g1)
ACCAG591042AG591043
length1,338742
length of high quality
(start - end)		---599 (72 - 670)
definitionCHROMAT_FILE: MSMg01no519_n24.b1 PHD_FILE: MSMg01no519_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:44 2005CHROMAT_FILE: MSMg01no519_n24.g1 PHD_FILE: MSMg01no519_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCTGGCCGTGTGGGAGGGGGGGCACCCCCTTCTCTCTCTGTGCGCGGC
AAGGATGATTCCCCTCTTATACACGTATGACCATAAATATACCTAATACG
CGTGGTGTATTAAGGTACAGGAGCTATATAGCGCAAAGAACACCGCGCTA
CACGGATTGTTGATATTGGATATAAGAGTAATCGTGGACGTGGTAGGATT
TCACGATATCTGCTTGTGTGTCGCCCTTTATCGAGCGCCCGTGCGCGCGT
GGACGCGGGCGCAACCGAAGAGGTATGCGGAGGACAGCTAGTAGAACCGA
GCCATCCTTTTTACACTCGTATCTGTTTTTAAATTTTTCGAGACTTGTAT
CACGGCGAAGACGGACACGGCAACAGATAGGATGATATAATAAAGAGAGA
AGTGACAAACAGAGAAAAGAGCGACGCGGCGAGAGGAGTAAAATCGCTAT
ACTATATGTCGCGGCAGGGTTGAGCGCCGGGCGAGCTAATCGTATAATAT
CCGCACGCGCCGCGGGAGGGCGGAGCGGTCGAAACTTATTTAACCGAAGT
GAGTATCGCGTGGAGCGAAAAGAGTGAGGTGGTGATGATTGGAGTAGATA
ATATATTTTCCTGGCCGGCATGTTGGAGGGGTTTTTAATATCAGTATACA
TACAGAGGTAGGAGGTCGGGTAGCGGCGGAGCAGACTCTTATAGAAATAA
CAAAACACATACNCCACGGACCCGAAGCGGACGCGTACGTAGTATTATGT
TTGCGATCGCATGTCGTGCCGGGTCACGAAATGGCTAGGGCTACGGCTCT
NTTACGGATGCGCCAAAGACACACTGGAGGACAAGTAGAGATAACGCGCT
GTTGTTAGGATAATGTCTATGAATAAATCTCGGGCCGCACATCGGTGTGT
GAGATGCATATGAGACGGTGGAAGTACAAAACTGGTAAACATGGAGAATG
TGATCGGAGATGCCGTGCATAGCTGGCATAACGCTCGCGCACCACAGAGT
GTTCGCGCATTACAGCCGTCGTTTTCCAAAGCCACGTGTTATTACGGATT
GTTTTGACATTCCACTCGAGCGCGGTTGGCGCCTATTCTCTTCCCGACTT
ACCAGTCATAACGTGTGTCTGTTCGCCTATTGTACCAAATAATGCGGAGC
TGTGTNACGCGAGTATACCGACGCGGTGACCCGGGCGGATAATCGCGTAA
GAAACGGTCTAAGCGCCCCTCTGATCTGATACTTCGCGCGGTTGTTTGGC
GTTATTCTCTCCAGAATTATCCTCCGCTGTATATAGCATAGAGATACAAN
GATCACCAGAATGTAGTGGATATTACACGACGAGACAG

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATTAGTATCTGGTTTAACCACTACAAAC
TATGTAAAATGAATCCCAATTTCTTCATATGAAAAATGAGGACAATTATC
ACATCAACTTTATGTAATATATATCAGAGTTGACCAAGCCCATACATTTT
CATTTAATAGTTTAGAGGATCTATTATTTGAGTCCTGTGGTAAAGGTAGA
ATATTAAAATTATATATTATATTCAGAACTGCAAGGAAAATAACCTTATT
GCACGTCTTATTATCTGTTTAAGTAGAATAAGCATGAGGTTATTGTGGTT
CCCTCACCCTTGGGAGAATATACAAATATCAACCTCAAACAATGACTGGA
TAAAAATCTCCTCCTTTCTTGTCCTTTTAAAATTATTTATTTGTCATGAA
AAAATACCCACAGGTCAAAGTTTAGCATGTAGTTACAGTTATATCAAAGG
TAAAAGGCAAAGAGACGGATCTACAGATTAGGAAAAGCTTGTGAAGGAAG
AACAATGGTTGCTTAGTGTTGTATGCCTAGTACTGAAAGTGACTGCTATA
GCTTTTAAACAAGAATTAGCTAATTCAAAAGTAATTGCAAGTGTGAATGA
ATGTTCAAGATATCTGGTTTGTGAAGAATATAGAAATTGTGAATAAATAA
CATTTTCAGTTACAAAGTTTAAACAGTCCAAATAATCTGGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_n24.g1 MSMg01no519_n24.g1 CHROMAT_FILE:
MSMg01no519_n24.g1 PHD_FILE: MSMg01no519_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:44 2005
         (599 letters)



>mm_chr3_7238902_7239900
          Length = 999

 Score = 1038 bits (537), Expect = 0.0
 Identities = 582/597 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttagtatctggtttaaccactacaaactatgtaaaatgaatcccaatttcttcatatgaa 62
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 999 ttagtatctggtttaaccactacaaattatgtaaaatgaaccccaatttcttcatatgaa 940

                                                                       
Query: 63  aaatgaggacaattatcacatcaactttatgtaatatatatcagagttgaccaagcccat 122
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 939 aaatgaggacaattatcacatcaactttatgtaatatatatcatagttgaccaagcccat 880

                                                                       
Query: 123 acattttcatttaatagtttagaggatctattatttgagtcctgtggtaaaggtagaata 182
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 879 acattttcatttaatagtttagaggatttattatttgagtcctgtggtaaagctagaata 820

                                                                       
Query: 183 ttaaaattatatattatattcagaactgcaaggaaaataaccttattgcacgtcttatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 819 ttaaaattatatattatattcagaactgcaaggaaaataaccttattgcacattttatta 760

                                                                       
Query: 243 tctgtttaagtagaataagcatgaggttattgtggttccctcacccttgggagaatatac 302
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 759 tctgtttaagtagaataagcatgagattattgtggttccctcacccttgggagaatatac 700

                                                                       
Query: 303 aaatatcaacctcaaacaatgactggataaaaatctcctcctttcttgtccttttaaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaatatcaacctcaaacaatgactggataaaaatctcctcctttcttgtccttttaaaat 640

                                                                       
Query: 363 tatttatttgtcatgaaaaaatacccacaggtcaaagtttagcatgtagttacagttata 422
           ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 639 tatttatttatcgtgaaaaaatacccacagttcaaagtttagcatgtagttacagttata 580

                                                                       
Query: 423 tcaaaggtaaaaggcaaagagacggatctacagattaggaaaagcttgtgaaggaagaac 482
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcaaaggtaaaaggcaaagagaaggatctacagattaggaaaagcttgtgaaggaagaac 520

                                                                       
Query: 483 aatggttgcttagtgttgtatgcctagtactgaaagtgactgctatagcttttaaacaag 542
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 519 aatggttgcttagtgttgtgtgcctagtactgaaagtgattgctatagcttttaaacaag 460

                                                                    
Query: 543 aattagctaattcaaaagtaattgcaagtgtgaatgaatgttcaagatatctggttt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 459 aattagctaattcaaaagtaattgcaagtgtgaatgaatgttcaagatatccggttt 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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