Query= MSMg01no520_g06.b1 MSMg01no520_g06.b1 CHROMAT_FILE:
MSMg01no520_g06.b1 PHD_FILE: MSMg01no520_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:25 2005
(145 letters)
>mm_chr3_79829999_79830544
Length = 546
Score = 267 bits (138), Expect = 2e-76
Identities = 141/142 (99%), Gaps = 1/142 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtttatatttataacccatttttagttcttttttt-tatatagcttcttatat 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctgtttatatttataacccatttttagttctttttttatatatagcttcttatat 264
Query: 64 atttagctattattcctctagcagaggtgcgggtagaggaggaagaggaggtggtggtgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttagctattattcctctagcagaggtgcgggtagaggaggaagaggaggtggtggtgg 324
Query: 124 tcgtggtggaggaggatggggg 145
||||||||||||||||||||||
Sbjct: 325 tcgtggtggaggaggatggggg 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 546
Length adjustment: 8
Effective length of query: 137
Effective length of database: 538
Effective search space: 73706
Effective search space used: 73706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no520_g06.g1 MSMg01no520_g06.g1 CHROMAT_FILE:
MSMg01no520_g06.g1 PHD_FILE: MSMg01no520_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:26 2005
(697 letters)
>mm_chr3_79990404_79991500
Length = 1097
Score = 1261 bits (652), Expect = 0.0
Identities = 685/696 (98%)
Strand = Plus / Minus
Query: 1 ctaacgtttatgggatgccaagggaggggaggctgtcttcaactgcagagcagtgatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ctaacgtttatgggatgccaagggaggggaggctgtcttcaactgcagagcagtgatctg 837
Query: 61 catactggtaaatgaaagactatgaatatggcaagcaatcataccacagggtaccatgaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 catactggaaaatgaaagactatgaatatggcaagcaatcataccacagggtaccatgaa 777
Query: 121 agccagataggtgaggttttgctttagagtgagtgtgatatttcacccagctactttaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agccagataggtgaggttttgctttagagtgagtgtgatatttcacccagctactttaag 717
Query: 181 ttattaaaaagaaaattggcaccatcagagcaaaattttctagcagcaagttgttatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttattaaaaagaaaattggcaccatcagagcaaaattttctagcagcaagttgttatagt 657
Query: 241 gaacaaactatcttcttagcagggcctgctttgtttgaatcaatgctgttatctccagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaacaaactatcttcttagcagggcctgctttgtttgaatcaatgctgttatctccagta 597
Query: 301 tttactttgtcctaagattctacaactgatagaacttaaaatatgtattaaattcttaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttactttgtcctaagattctacaactgatagaacttaaaatatgtattaaattcttaat 537
Query: 361 ggcatcttcaaatacaaaataaccaagataaagtactaattttctggctaaacacgtacc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ggcatcttcaaatacaaactaaccaagataaagtactaattttctggctaaacacgtacc 477
Query: 421 caaatcccacactgggtatatgcaccatccacccaggttttcaatcaaagcctagtaatt 480
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 476 caaatcccacactgggtatttgcaccatccacctaggttttcaatcaaagcctagtaatt 417
Query: 481 atatttgattcttgctgtctcttttcatctttcctaggcagacaaaaatcaaaactaacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 atatttgattcttgctgtctcttttcatctttcctaggcagacaaaaatcaaaactaacc 357
Query: 541 ccacctctgaaaactttaaaatcttgagatctctctccctcatgctgccaccctcattct 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 ccacctctgaaaactttaaaatcttgagatctctctccttcatgctgccaccctcattct 297
Query: 601 gtgccccctggagtgagaacctccccagttatgaaacatttgaatcctttaaccttggaa 660
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 296 gtgccccctggagtaagaaccttcccaattatgaaacatttgaatcctttaaccttggaa 237
Query: 661 atatacttcatgggggcttggctcctttctatagat 696
||| || ||||||||||||||||||||||||||||
Sbjct: 236 atacacgccatgggggcttggctcctttctatagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
