NAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTAATGCATTTACTTTATATTTTAGGAATTCGAGTTTACAA
TACTTCAGCAACTCTTTTGCAAATGAGACTAATTTATTATTATTGGTTTA
ATAAAAACAAATTCTATCTTCTCTGAGTTATCAGCATTAATTAACATACA
AGACTACATTTTTATTCTATGTCAGTGTGCATTTCATAAGCTTCTGCAGG
TTTATTGATAGAATAAGCTACTGTTACTTCTACTAAATATTTAAGATTAT
GAAAAATGCAAATATGTGTTTAACTAAATTAAATCATCATTCCAACAAAA
TTTGTTCCAATTGCATTTGCATTTTGTAATATGTTGGATAGGTGATTTTC
AAGACCTTTAGCTAACCCGGTTACTGGACTGACAGATACTAACCTGAGTG
AACTGATAGCTATTCCCAGGCGACTTGGATCATCTCTAAGTAAGATGGGA
TGGAGAAGCAGCAATTACTAGACATCACTTAGAGTTTTGTATTTTAATTC
CCTTACTTGTGTACAGTATAGAGATGTTACATTATTTTTTTTAACTGCAG
AAATACATGTGTTCATTTTGCAATTTGAAAATGTGTACTAATGCGTTCAG
AAATTTATAGAGCTCATACTTAGCTATAGTATGATGGATTCATGTATATG
ATTTTCAAAAGAAATCCCTAATATCAAATATTATATTGGGGGAAAAGTTT
TTAGATTN

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTAAAGCATGTTGGCTAGTCAGATC
CCCGCCCCCGAAATAACATAGCTTTGTGTTCAGTTAGAAGTAGTACCTCT
TTCGACCAGGTTTTCCAGCTTTGTTGAGTATAGCCTTTTGTAGAAGGATC
TGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCA
TTTCTGATTTTGTTAATTAGGATTTTGTCCCTGTGCCCTCTAGTGAGTCT
AGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCG
TTTGGTTAATTCTTTGAATAGTTCTTCTTGTTTCCACTTGGTTGATTTCA
CCCCTGAGTTTGATTATTTCCTGCCGTCTACTCCTCTTGGGTGAATTTTC
TTCCTTTTTTTCTAGAGCTTTTAGATGTGTTGTCAAGCTGCTAGTGTGTG
CTCTCTCCAGTTTCTTCTTGGAGGCACTCAGAGCTATGAGTTTCCCTCTT
AGAAATGCTTTCATTGTGTCCCATAGGTTTGGGTATGTTGTGGCTTCATT
TTCATTAAGCTCTAAAAAGTCTTTAATTTCTTTCTTTATCCCATCCTTGA
CCAAGGTATCATTGAGAAGAGTGTTATTCAGTTTCCACGTGAAAGTTGGC
TTTCCATTATTTATGTTGTTATTGAAGATCAGCCTTAGTCCATGGTGGTC
TGATAGG

Query= MSMg01no520_g13.b1 MSMg01no520_g13.b1 CHROMAT_FILE:
MSMg01no520_g13.b1 PHD_FILE: MSMg01no520_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:27 2005
         (692 letters)



>mm_chr3_56110944_56112035
          Length = 1092

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Minus

                                                                        
Query: 56   tcagcaactcttttgcaaatgagactaatttattattattggtttaataaaaacaaattc 115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tcagcaactcttttgcaaatgagactaatttattattattggtttaataaaaacaaattc 1033

                                                                        
Query: 116  tatcttctctgagttatcagcattaattaacatacaagactacatttttattctatgtca 175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 tatcttctctgagttatcagcattaattaacatacaagactacatttttattctatgtca 973

                                                                        
Query: 176  gtgtgcatttcataagcttctgcaggtttattgatagaataagctactgttacttctact 235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  gtgtgcatttcataagcttctgcaggtttattgatagaataagctactgttacttctact 913

                                                                        
Query: 236  aaatatttaagattatgaaaaatgcaaatatgtgtttaactaaattaaatcatcattcca 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  aaatatttaagattatgaaaaatgcaaatatgtgtttaactaaattaaatcatcattcca 853

                                                                        
Query: 296  acaaaatttgttccaattgcatttgcattttgtaatatgttggataggtgattttcaaga 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  acaaaatttgttccaattgcatttgcattttgtaatatgttggataggtgattttcaaga 793

                                                                        
Query: 356  cctttagctaacccggttactggactgacagatactaacctgagtgaactgatagctatt 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  cctttagctaacccggttactggactgacagatactaacctgagtgaactgatagctatt 733

                                                                        
Query: 416  cccaggcgacttggatcatctctaagtaagatgggatggagaagcagcaattactagaca 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  cccaggcgacttggatcatctctaagtaagatgggatggagaagcagcaattactagaca 673

                                                                        
Query: 476  tcacttagagttttgtattttaattcccttacttgtgtacagtatagagatgttacatta 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  tcacttagagttttgtattttaattcccttacttgtgtacagtatagagatgttacatta 613

                                                                        
Query: 536  ttttttttaactgcagaaatacatgtgttcattttgcaatttgaaaatgtgtactaatgc 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  ttttttttaactgcagaaatacatgtgttcattttgcaatttgaaaatgtgtactaatgc 553

                                                                        
Query: 596  gttcagaaatttatagagctcatacttagctatagtatgatggattcatgtatatgattt 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552  gttcagaaatttatagagctcatacttagctatagtatgatggattcatgtatatgattt 493

                                                 
Query: 656  tcaaaagaaatccctaatatcaaatattatattgggg 692
            |||||||||||||||||||||||||||||||||||||
Sbjct: 492  tcaaaagaaatccctaatatcaaatattatattgggg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)