Query= MSMg01no520_h22.b1 MSMg01no520_h22.b1 CHROMAT_FILE:
MSMg01no520_h22.b1 PHD_FILE: MSMg01no520_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:33 2005
(645 letters)
>mm_chr3_77741926_77742970
Length = 1045
Score = 1125 bits (582), Expect = 0.0
Identities = 627/648 (96%), Gaps = 12/648 (1%)
Strand = Plus / Plus
Query: 5 gaattccaagcccagggtcagctcaaggactgcctaggacatgggaacactggtggaggc 64
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 203 gaattccaagcccagggtcggctcaaggactgcctaggacattggaacactggtggaggc 262
Query: 65 taatccaacttagctacatgtcaaaatcaatccttagagacactcaaaataaaataatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taatccaacttagctacatgtcaaaatcaatccttagagacactcaaaataaaataatat 322
Query: 125 tgaaggaaaatacacagatccgttcactgactaaagtaaggacagatttggagcattcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaggaaaatacacagatccgttcactgactaaagtaaggacagatttggagcattcat 382
Query: 185 tgtacaggacaccatggttccaggagactaagtttccgtgaacttttcacctccggtctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtacaggacaccatggttccaggagactaagtttccgtgaacttttcacctccggtctg 442
Query: 245 catccaagcttttgggcctgtcacacagagtcactcctggggtgggta-tg------gca 297
||||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct: 443 catccaagcttttgggcctgtcacacagagtcact-----gctgggtactgccataccca 497
Query: 298 cccttaagttgaatacttcctttgatatgcatgctttccttactagagaccacgtgccat 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 498 cccttaagctgaatacttcctttgatatgcatgctttccttactagagaccacatgccat 557
Query: 358 actaataaacttctggtaaagtccagttgcttttcgcaacatatatttcttccttcctca 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 actaataaacttctggtaaagtccagttgcttttcgcaacatatatttcttccttcttca 617
Query: 418 atccaaaagctatgtgtctatgaactttattgggtctctgaattgattaagtttcattat 477
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atccaaaagctatgtgtctgtgaactttattgggtctctgaattgattaagtttcattat 677
Query: 478 tctccattttaatgacttcaagaattttttgtaagatttttttcatatatctaaaaggaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tctccattttaatgacttcaagaattttttgtaagatttttttcatatatctaaaaggaa 737
Query: 538 atcatgaaatcattcatttgttttcatcttagtggtttcatcctttgcccttttaaatta 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atcatgaaatcattcatttgttttcatcttagtggtttcatcctttgcccttttaaatta 797
Query: 598 aatatatctcccatacactcagtcatgagaacacttgttctactgttg 645
|||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 798 aatatatctcccatacactcagtcatgagaacacttgttccactgttg 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_h22.g1 MSMg01no520_h22.g1 CHROMAT_FILE:
MSMg01no520_h22.g1 PHD_FILE: MSMg01no520_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:33 2005
(657 letters)
>mm_chr3_77887330_77888386
Length = 1057
Score = 605 bits (313), Expect = e-177
Identities = 320/323 (99%), Gaps = 2/323 (0%)
Strand = Plus / Minus
Query: 1 tatgatttctgtgacagcgtgcacagggcatgcacaggatggccaacatgaaacaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgatttctgtgacagcgtgcacagggcatgcacaggatggccaacatgaaacaaatta 262
Query: 61 aatgatatctggaaggtgtcatttttcttttaagtttaaatcagagatttttcttttgca 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgatacctggaaggtgtcatttttcttttaagtttaaatcagagatttttcttttgca 202
Query: 121 tctgagcccaaagaggagggatttggaggaaacatcccattatcccatttaggaatgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagcccaaagaggagggatttggaggaaacatcccattatcccatttaggaatgagg 142
Query: 181 gttccaaggtctccttcctataccttttctggcttgctctgtttctgtgcatgcctgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gttccaaggtctccttcctataccttttctggcttgctctgtttctgtgcatgcctgtct 82
Query: 241 gtctgtctgtgtgtgtgtatacatatatataatatgtatatgtgtatataaatataaaaa 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtctgtctgtgtgtgtgtatac--atatataatatgtatatgtgtatataaatataaaaa 24
Query: 301 gtgtatatttatataatatatat 323
|||||||||||||||||||||||
Sbjct: 23 gtgtatatttatataatatatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
