Query= MSMg01no520_m12.b1 MSMg01no520_m12.b1 CHROMAT_FILE:
MSMg01no520_m12.b1 PHD_FILE: MSMg01no520_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:55 2005
(707 letters)
>mm_chr3_45296709_45297815
Length = 1107
Score = 1315 bits (680), Expect = 0.0
Identities = 697/703 (99%)
Strand = Plus / Plus
Query: 5 gaattctgtcttagatttaaacactggcttagagatatacttatccaggcacaaacattg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcttagatttaaacactggcttagagatatacttatccaggcacaaacattg 264
Query: 65 caatcagagaaattaaatgagcacttgagtcttgaacgttttagctcgagttctcactta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatcagagaaattaaatgagcacttgagtcttgaacgttttagctcgagttctcactta 324
Query: 125 ccatcacacagcaagaatatgcagaggtctgtcttccccagatccagccacagatgagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatcacacagcaagaatatgcagaggtctgtcttccccagatccagccacagatgagag 384
Query: 185 atatgtgaatctgttagaggaaccatatggtagacaaaggaatttggagtaggaaaaaga 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatgtgaatctgttagaggaaccatatggtagacaaaggaatttggagtaggaaaaagg 444
Query: 245 caagggttcaaaagaaaacatggacaaaatagggttaggggagatggggaagagactgaa 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 caagggttcaaaagaaaacatggacaaaatagggtgaggggagatggggaagagactgaa 504
Query: 305 ctccagagaagacaaggtatcctctgaaattttctgtaacgttttatctgactatttttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctccagagaagacaaggtatcctctgaaattttctgtaacgttttatctgactatttttc 564
Query: 365 aagatagattttgtatatgaataaatttttcattcactcctcgtatctttggaattcata 424
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 aagatagattttgtatttgaataaatttttcattcactcctcgtatctttggaatttata 624
Query: 425 tcaatattctcataagttctatttttatgtgacacatcacatgtctttttatgagagatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcaatattctcataagttctatttttatgtgacacatcacatgtctttttatgagagatt 684
Query: 485 tatgtgctagttttcttttcagattgaattcacaatttagtcacaaagaattactgagcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgtgctagttttcttttcagattgaattcacaatttagtcacaaagaattactgagcc 744
Query: 545 ccactctccaatgcttttcaccttcatacagattcaatatttattatgtgaataaattat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccactctccaatgcttttcaccttcatacagattcaatatttattatgtgaataaattat 804
Query: 605 tcatcttanaccactgacctagcaataacagtttgaaaagaagttgtaatgggaatgttt 664
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcatcttaaaccactgacctagcaataacagtttgaaaagaagttgtaatgggaatgttt 864
Query: 665 ctggaaactttatcaccacttttgtaagttataacctatgtta 707
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 865 ctggaaactttatctccacttttgtaagttataacctatgtta 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_m12.g1 MSMg01no520_m12.g1 CHROMAT_FILE:
MSMg01no520_m12.g1 PHD_FILE: MSMg01no520_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:55 2005
(546 letters)
>mm_chr3_45419210_45420154
Length = 945
Score = 841 bits (435), Expect = 0.0
Identities = 465/475 (97%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 70 tctcagaactcagtggcagtttctccagtgagaagctgaaagaagccagtttgaatcagt 129
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 944 tctcagaactcagtggcagtttctcccgtgagaagctgaaagaagccagtttgaatcagt 885
Query: 130 aagcttgtataggagtttgagccagaacagctaagttgaaccaggcagccagagttgaga 189
|||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 884 aagcttgtatagtagtttgagccagaacagcttagttgaacgaggcagccagagttgaga 825
Query: 190 gagaactagaaagggtgagcttattcaacaggaagtctctgagacacaaattacatcagg 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gagaactagaaagggtgagcttattcaacaggaagtctctgagacacaaattacatcagg 765
Query: 250 agaatcaaagttatctttacacaaaactaaatataattcgtctgttagtggatatagaga 309
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 agaatcaaagttatctttacacaaaactaaatataattcgtctgttagtggatatagagg 705
Query: 310 gacagcagagaaataacacacagacaggaactaggctaagaataaccaagaaaacttggt 369
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 704 gacaacagagaaataacacacagacaggaactaggctaagaataaccaagagaacttggt 645
Query: 370 aatagaatcacaccaatgtattactcattgtgcctagtattttgtataacagagaaatat 429
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aatagaatcacaccaatg-attactcattgtgcctagtattttgtataacagagaaatat 586
Query: 430 ttttacttttttattgaaaatttttttcatgaattgattcatagcttcattttaatgaac 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttttacttttttattgaaaatttttttcatgaattgattcatagcttcattttaatgaac 526
Query: 490 ctattccatttctattaggaaattaaataaattactgcattccttccatactact 544
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 ctattccatttcaattaggaaattaaataaattactgcatttcttccatactact 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
