CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACTGATGAATACCAAATGGCTGAGAAGCACCTGAAAAAATGTT
CAGCATCCTTAATCATCAGGGAAATGCAAATCAAAGCAATCTTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAAGAACACTCCTCCATTGATGATGGG
AATGCAAGCTTTTACAACCACTCTAGATATCAGTCTGGAGGTTCCTCAGA
AAATTGGACATAATACTACCAGAAGATTCAGCAATACCTGTCCTGGGCAT
ATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTATGT
TCATAGCATCCTCATTTATAATAGCCAGAAGCTGGAAAGAACCCACATGT
CCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGA
GTACTACTCAGCTATTAAAAACAATGGATTTATGAAATTCTTGGACAAAT
GGATGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCCATCACAAAAG
AAATCCTTAGATATGCACTCACTGATAAGTGGCTATTAGCCCAGAAACAT
AGAACACCCTAGCTACAATTTGCAAAATACAAGAAAAACAAAAAGAGGGA
AGACCAATGGGTTGATACATCATTCCTCCTAAGAATAGGGAACAAATTAC
CCATAAAGGGAG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAACCCAATCTTCCTATCTCCTTTAGGA
CAACAAACAGCTCATGAATATTCAAACCTTATGAGGACCACATTTTGAAT
AGCACTACACTATATATATGTGCATTCTATACAGAAACAGAGATAATCTA
TAGCTCCCATGCACACAGTTTCCATTTGAGAGAGGGAAAAAAGAAAGTAA
GATACTTCTTTTACTGTTTTCAAATGAATGAAAAACATGTATGTATGGAA
GAATGTATTGATGGACACACATATGCATATTTACATAGATCTACAAAGGG
AGTGAGAGAAATAAAGGCTTAGAGAGGTATAAAATTTGGCCCAAGGGTAT
AAGGCAAAGTAAAGACAGAGCCAGGATTTGAATTCAAATTAGTCAAACCA
GGAAGGCCAAACTATTTATAGAAAACCAGGACACAAAAAAATACTTTGAC
TCAAAACATATTTACATAGTGATTTATAAATCTAAATATAGAGAGTCAGG
TACATCGGTTGCTTGTTTTAAAGGAGCGAATAGCAGCAAATGCAAAACCA
AGCCATAAAAGGCACCTGTTTAATTACAGAAGTCAACACAGAACTGTCTC
CTTAGAAAAAAAATCTAGAGCAGAGGGGAAGCTTAAACTCAGACCTAAGG
CTAGACTGGGATTTGCTGAGAGACAAAACACTTACAAAAAGACAGTACAA
GTAATCTTTATGAAG

Query= MSMg01no520_o01.g1 MSMg01no520_o01.g1 CHROMAT_FILE:
MSMg01no520_o01.g1 PHD_FILE: MSMg01no520_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:03 2005
         (614 letters)



>mm_chr3_55963182_55964191
          Length = 1010

 Score = 1141 bits (590), Expect = 0.0
 Identities = 607/614 (98%), Gaps = 4/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacccaatcttcctatctcctttaggacaacaaacagctcatgaatattcaaaccttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taacccaatcttcctatctcctttaggacaacaaacagctcatgaatattcaaaccttat 260

                                                                       
Query: 61  gaggaccacattttgaatagcactacactatatatatgtgcattctatacagaaacagag 120
           |||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||| 
Sbjct: 261 gaggaccacattttgaatagcactacactatatat--gagcattctgtacagaaacaga- 317

                                                                       
Query: 121 ataatctatagctcccatgcacacagtttccatttgagagagggaaaaaagaaagtaaga 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 -taatctatagctcccatgcacacagtttccatttgagagagggaaaaaagaaagtaaga 376

                                                                       
Query: 181 tacttcttttactgttttcaaatgaatgaaaaacatgtatgtatggaagaatgtattgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tacttcttttactgttttcaaatgaatgaaaaacatgtatgtatggaagaatgtattgat 436

                                                                       
Query: 241 ggacacacatatgcatatttacatagatctacaaagggagtgagagaaataaaggcttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggacacacatatgcatatttacatagatctacaaagggagtgagagaaataaaggcttag 496

                                                                       
Query: 301 agaggtataaaatttggcccaagggtataaggcaaagtaaagacagagccaggatttgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agaggtataaaatttggcccaagggtataaggcaaagtaaagacagagccaggatttgaa 556

                                                                       
Query: 361 ttcaaattagtcaaaccaggaaggccaaactatttatagaaaaccaggacacaaaaaaat 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 ttcaaattagtcaaaccaggaaggccaaactatttataggaaaccaggacacaaaaaaat 616

                                                                       
Query: 421 actttgactcaaaacatatttacatagtgatttataaatctaaatatagagagtcaggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 actttgactcaaaacatatttacatagtgatttataaatctaaatatagagagtcaggta 676

                                                                       
Query: 481 catcggttgcttgttttaaaggagcgaatagcagcaaatgcaaaaccaagccataaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catcggttgcttgttttaaaggagcgaatagcagcaaatgcaaaaccaagccataaaagg 736

                                                                       
Query: 541 cacctgtttaattacagaagtcaacacagaactgtctccttagaaaaaaaatctagagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cacctgtttaattacagaagtcaacacagaactgtctccttagaaaaaaaatctagagca 796

                         
Query: 601 gaggggaagcttaa 614
           ||||||||||||||
Sbjct: 797 gaggggaagcttaa 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1010
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1000
Effective search space:   604000
Effective search space used:   604000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)