BAC Information

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BAC

Clone NameMSMg01-520P02
Chromosome3 (Build37)
Map Location 144,789,323 - 144,790,206
singlet/doubletsinglet
Overlap geneOdf2l
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520P02.T7 (MSMg01no520_p02.b1)MSMg01-520P02.TJ (MSMg01no520_p02.g1)
ACCAG591855AG591856
length768455
length of high quality
(start - end)		714 (44 - 757)---
definitionCHROMAT_FILE: MSMg01no520_p02.b1 PHD_FILE: MSMg01no520_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:07 2005CHROMAT_FILE: MSMg01no520_p02.g1 PHD_FILE: MSMg01no520_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTATTCCTGTCATTAGCTGCAGTTCTTCTTGTAAAAGGTTGTCTCA
GCCTATAGTGTACTTAGTAAGAGACTAGAGTGGAAAGTACAAATTGGTAT
GTGACTGACCTGGCCTTCAGCTAGAGAATGAAACTTTCTGAAGGGTGGAT
TTAAAACTAAAATTGTGGTGTGCAGAGATGGTTCAGTGGCTGATCAGTTG
CAGAAGAGATGGTTCCCACTTCTGGCCTCCATGGGTACCAGACACACACA
GTACACAGACTTGCAGGCAAAACACTCATTTACATAAAATAGTAATAAAT
AAATCTTTTAAAAATAAAACTCCCGAGAGATGCCATGTATCTGTTTACTG
TGGCATCAGTTGGAACAGAATGATTTTACGATTTCAAATATGCTTCACTT
TGGAACAAAGACAGACTGATAATACTCTAGGGTGTTTTACTTAATGTTGT
CTTAACATGTAGGTATGTGCTTTTTTTATTTTGTCAGGCTAATCTTTCTG
CATCCAGTTTGAAGAAGATTTTTGAACAGAACGACATATTATCAAAAGAA
TTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACA
GACTGACTCTGAACAAGTAAGGCTCCTGTGCTGTGTCTGTAGTGATGCCT
CCCACTTGGAGGATATTTTATTTCTCTAACTGAATATAAAATATTGGTAT
ATGGAAACAAAATAATTT

AACATGAGGGAGCTGGGCGCTGGTCTTCNANNACATTTTAGGGGTGGGAA
CCACCTTAAATTTAGGGAAAAAAGGGGGGGTTAAAATTTTTNCCNNNTAC
CCCCGGGGGGGGTGCCCCCCCGGGGGGGGNNNGGGAAATTCTGGCTGGCG
AGATGGCTCAGTGGGGNTTTAAAAAGCGCCCTACTGGCTTCCTTTTCCCC
GAAAAGGGGTCCCCCTGGGAAAAATTTTCCAAAAAAATCCCCCCCCCAAA
GGCCATATTCCCCCCCCCCCATTGGGGTGGGGGGGTTTCCCCCCCAAACC
CCTTCCCCTTAAACGAAAAACCGGGAAGGGGCCCCCCCCCTTTTTCCCTG
GGGGGAGAAANNNNCCCCGTGGGGGGGGGGCGGGTTCNCGGGGGGGGGGG
GCCCCTCCCCCCTTTTTAATAAAAAAAAAAAATAAAACCCCCTCTTTAAA
AAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_p02.b1 MSMg01no520_p02.b1 CHROMAT_FILE:
MSMg01no520_p02.b1 PHD_FILE: MSMg01no520_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:07 2005
         (714 letters)



>mm_chr3_144789292_144790406
          Length = 1115

 Score = 1006 bits (520), Expect = 0.0
 Identities = 707/884 (79%), Gaps = 174/884 (19%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattcctgtcattagctgcagttcttcttgtaaaaggttgtctcagcctata 64
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 32  gaattctttattcctgtcattagctgcagttcttcttataaaaggttgtctcagcctata 91

                                                                       
Query: 65  gtgtacttagtaagagactagagtggaaagtacaaattggtatgtgactgacctggcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  gtgtacttagtaagagactagagtggaaagtacaaattggtatgtgactgacctggcctt 151

                                                                       
Query: 125 cagctagagaatgaaactttctgaagggtggatttaaaactaaaattgtggtgtgcagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cagctagagaatgaaactttctgaagggtggatttaaaactaaaattgtggtgtgcagag 211

                                                                       
Query: 185 atggttcagtggctgatcagttgcagaagagatggttcccacttctggcctccatgggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atggttcagtggctgatcagttgcagaagagatggttcccacttctggcctccatgggta 271

                                                                       
Query: 245 ccagacacacacagtacacagacttgcaggcaaaacactcatttacataaaatagtaata 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 ccagacacacacagtacacagacttgcagacaaaacactcatttacataaaatagtaata 331

                                                                       
Query: 305 aataaatcttttaaaaataaaactcccgagagatgccatgtatctgtttactgtggcatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aataaatcttttaaaaataaaactcccgagagatgccatgtatctgtttactgtggcatc 391

                                                                       
Query: 365 agttggaacagaatgattttacgatttcaaatatgcttcactttggaacaaagacag--- 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 392 agttggaacagaatgattttacgatttcaaatatgcttcactttggaacaaagacagcct 451

                                                                       
Query: 421 ------------------------------------------------------------ 421
                                                                       
Sbjct: 452 gtggtctgcacattagcagaacaaatacttcaaagctgtggggttctacaacttcctctt 511

                                                                       
Query: 421 ------------------------------------------------------------ 421
                                                                       
Sbjct: 512 attttgatttaaccactgtgtagtgcattctgtctgttattggtaaacttgccagggctt 571

                                                                       
Query: 422 --------------------------------------------------actgataata 431
                                                             ||||||||||
Sbjct: 572 accaatactatattcaaaataatggttttgaaactaggaaatagttcctcactgataata 631

                                                                       
Query: 432 ctctagggtgttttacttaatgttgtcttaacatgtaggtatgtgcttttttt-attttg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 632 ctctagggtgttttacttaatgttgtcttaacatgtaggtatgtgcttttttttattttg 691

                                                                       
Query: 491 tcaggctaatctttctgcatccagtttgaagaagatttttgaacagaacgacatattatc 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tcaggctaatctttctgcatccagtttgaagaagatttttgaacagaacgacatattatc 751

                                                                       
Query: 551 aaaagaattagacacttttaaccgtgtgaaattagccttagaacatcttattaaacagac 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaaagaattagacacttttaaccgtgtgaaattagccttagaacatcttattaaacagac 811

                                                                       
Query: 611 tgactctgaacaagtaaggctcctgtgctgtgtctgtagtgatgcctcccacttggagga 670
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgactatgaacaagtaaggctcctgtgctgtgtctgtagtgatgcctcccacttggagga 871

                                                       
Query: 671 tattttatttctctaactgaatataaaatattggtatatggaaa 714
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 tattttatttctctaactgaatataaaatattggtatatggaaa 915


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1115
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1105
Effective search space:   777920
Effective search space used:   777920
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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