Query= MSMg01no520_p24.b1 MSMg01no520_p24.b1 CHROMAT_FILE:
MSMg01no520_p24.b1 PHD_FILE: MSMg01no520_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
(657 letters)
>mm_chr3_42211948_42213003
Length = 1056
Score = 1187 bits (614), Expect = 0.0
Identities = 644/654 (98%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 4 ggaattcataacttactggaagcttccagttccttaagcaagactcaggctgtgagtaca 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataacttacaggaagcttccagttccttaagcaagactcaggctgtgagtaca 263
Query: 64 ctgtcagtgactacaacactatctcctcagataatgcagtgtggaaacagtgtatcatgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtcagtgactacaacactatctcctcagataatgcagtgtggaaacagtgtatcatgc 323
Query: 124 tacctctttagggcagacacagaataatatttgaaagaacattaattggtggaaagttgg 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacctctttggggcagacacagaataatatttgaaagaacattaattggtggaaagttgg 383
Query: 184 attgttcattagtggtttgcctacgcaacaaagctatatcacattttgttgtatgagaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgttcattagtggtttgcctacgcaacaaagctatatcacattttgttgtatgagaac 443
Query: 244 attgctgagtcctgagtaggcccacaagcatacactagagggattagtcaaagggggctt 303
|||||||| |||||| |||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 444 attgctgaatcctgactaggcccacaagcataaactagagggattagtcaaaaggggctt 503
Query: 304 aaatcaatgacaaaaaccttctcagattgtgactgcttttttttttctttcccctctgcc 363
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 504 aaattaatgacaaaaaccttctcagattgtgactggttttttttt-ctttcccctctgcc 562
Query: 364 tctaacttctctgtctctgaagttattaattaattttcctacaaattttgtgacttctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctaacttctctgtctctgaagttattaattaattttcctacaaattttgtgacttctta 622
Query: 424 actggcaatagaaaaggtggtttgtttatgttacagtgactgagtcacatacggaagatt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 actggcaatagaaaaggtggtttgtttatgttacagtgactgagtcacatacggaagatt 682
Query: 484 ggtagacaacaactattgtcagctaatctttgcattagccagttgtttagagtatacttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggtagacaacaactattgtcagctaatctttgcattagccagttgtttagagtatacttg 742
Query: 544 gaattacattttaagtgagcttaatgtacaatcttcttttggtttgatagggagtgatat 603
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 743 gaattacattttaagtgagcttaatgtacaatctttttttggtttgatagggagtgatat 802
Query: 604 gtcaaatcttatgtgagcatttggaaattttacctcttactttagcatcttata 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtcaaatcttatgtgagcatttggaaattttacctcttactttagcatcttata 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1056
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1046
Effective search space: 676762
Effective search space used: 676762
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_p24.g1 MSMg01no520_p24.g1 CHROMAT_FILE:
MSMg01no520_p24.g1 PHD_FILE: MSMg01no520_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
(604 letters)
>mm_chr3_42301544_42302547
Length = 1004
Score = 1168 bits (604), Expect = 0.0
Identities = 604/604 (100%)
Strand = Plus / Minus
Query: 1 cattaccccacccccaaagaggacactggtcttcctcttccacctgggtctgagaaaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cattaccccacccccaaagaggacactggtcttcctcttccacctgggtctgagaaaatg 745
Query: 61 cttcatggagagaaagaggtgggggtgggcagtgaacagcttttgaaaacaaatgtggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttcatggagagaaagaggtgggggtgggcagtgaacagcttttgaaaacaaatgtggaa 685
Query: 121 atgaaagagaaatgaacaaggaaagagaggattgcatcaaagtgataatagaaattcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgaaagagaaatgaacaaggaaagagaggattgcatcaaagtgataatagaaattcata 625
Query: 181 tgcaatagggcctttgcaatttataatatagacttatgttgtatgcataataagcccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcaatagggcctttgcaatttataatatagacttatgttgtatgcataataagcccagg 565
Query: 241 ttatccaaatgtattctggaaatgagagctgtgatttggcagagtaggagtgacctggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatccaaatgtattctggaaatgagagctgtgatttggcagagtaggagtgacctggga 505
Query: 301 caggccacagtaaagccacttgttgctgtgccctttcaggttgtatcccatgagggtctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggccacagtaaagccacttgttgctgtgccctttcaggttgtatcccatgagggtctt 445
Query: 361 acctgattgtgaaggagttttatcagacacgttggatgaaagtcatagacaaattgtatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctgattgtgaaggagttttatcagacacgttggatgaaagtcatagacaaattgtatg 385
Query: 421 agaaatgtaattctgtctcctgttgtgtgtattagcacctaatgtcaccttctctgaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaatgtaattctgtctcctgttgtgtgtattagcacctaatgtcaccttctctgaata 325
Query: 481 ctaaccatagcttctccaacataaatccagttgcagaaatgaacacaggaaatggctgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaaccatagcttctccaacataaatccagttgcagaaatgaacacaggaaatggctgac 265
Query: 541 attcttcaacttgaacagctccaaggatgactggcacctcacttcaggcatctcaactct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attcttcaacttgaacagctccaaggatgactggcacctcacttcaggcatctcaactct 205
Query: 601 ggag 604
||||
Sbjct: 204 ggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
