Query= MSMg01no521_j13.b1 MSMg01no521_j13.b1 CHROMAT_FILE:
MSMg01no521_j13.b1 PHD_FILE: MSMg01no521_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(587 letters)
>mm_chr3_136347066_136348049
Length = 984
Score = 1013 bits (524), Expect = 0.0
Identities = 568/584 (97%), Gaps = 5/584 (0%)
Strand = Plus / Plus
Query: 5 cgtggcaaaccctgttgctttagtaaaggacagctccttggagagccaggctttctactc 64
||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 205 cgtggcagaccctgttgctttagtagacgacagctccttggagagccaggctttctactc 264
Query: 65 ctagaagggctttctttgcattaggtgtgtgtttcctcttatcctgtccaccactctcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagaagggctttctttgcattaggtgtgtgtttcctcttatcctgtccaccactctcct 324
Query: 125 ggtggcttgggggcctctgcccttacagagaagaagttcgtattggtctgcgaagacttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtggcttgggggcctctgcccttacagagaagaagttcgtattggtctgcgaagacttt 384
Query: 185 cccaagtccagactccgttccctttgaacagatgggctgtgtgctccatggctttgcccc 244
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccgagtccagactcagttccctttgaacagatgggctgtgtgctccatggctttgcccc 444
Query: 245 ttctctgttttgtttgcagctcctcttgaccaagtcctgcatgttcatgttcttatatct 304
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcagttttgtttgcagctcctcttgaccaagtcctgcatgttcatgttcttatatct 504
Query: 305 ctgtgctcagccctccaggctgtcttgcttccttcaagtcattgccgatgactgcttgta 364
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 505 ctgtgctcagccctccaggctgtcttgcttccttcaagtcatcgctgatgactgcttgta 564
Query: 365 gacgaatgactagcacatctatatttacaatctgttctttccccctctggaaggatttct 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gacggatgactagcacatctatatttacaatctgttctttccccctctggaaggatttct 624
Query: 425 caagccctgcgacgacaacgacagttgctatgtatgggtgtggtgcaaatacagtggggg 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagccctgcgac---aacgacagttgctatgtatgggtgtggtgcaaatacagtggggg 681
Query: 485 aactgttcggtgtttcctggcctggcgatgttgccactatccatcctg-ccaatccaacc 543
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct: 682 aactgttcggtgtttcctggcctggcgatgttgccaccatccatc-tggccaatccaacc 740
Query: 544 tgtcactcagttcaggccttttaaatgcttctaccctgttgcag 587
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcactcagttcaggccttttaaatgcttctaccctgttgcag 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 984
Length adjustment: 10
Effective length of query: 577
Effective length of database: 974
Effective search space: 561998
Effective search space used: 561998
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_j13.g1 MSMg01no521_j13.g1 CHROMAT_FILE:
MSMg01no521_j13.g1 PHD_FILE: MSMg01no521_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:58 2005
(629 letters)
>mm_chr3_136377695_136378725
Length = 1031
Score = 1091 bits (564), Expect = 0.0
Identities = 614/634 (96%), Gaps = 10/634 (1%)
Strand = Plus / Minus
Query: 1 ttggtgg-aatatccatgaaacatggcaaagggataagggtggagcccttcgcctggggc 59
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttggtggaaataaccatgaaacatggcaaagggataagggtggagcccttcgcctggggc 729
Query: 60 agggcttcgcggtccccacactgttgcatgggcctgatgaatgccttgctgtatcagttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agggcttcgcggtccccacactgttgcatgggcctgatgaatgccttgctgtatcagttt 669
Query: 120 catgggtgttgtaagatacttagtagtgtatctagtccttactcactcagttccagtagc 179
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 668 catgggtgttgtaagagacttagtagtgtatctagtccttactcactcagctccaatagc 609
Query: 180 tgacaaccactgcccaaggcatctcaactcctgccctggaaaccactcgaggaataacat 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 608 tgacaaccactgcccaaggcatctcaactcctgccctggaaaccactcgaggaataactt 549
Query: 240 taaaaacatgtcacagcggctcataacacaaa--atacctgagggtaatcgctatacaca 297
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 taaaaacatgtcacagcggctcataacacaaaatatacctgagggtaatcgctatacaca 489
Query: 298 catgaacaatgatccaaacaggcatcactttagaaatgggctgcttgtcttaaagaatag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 catgaacaatgatccaaacaggcatcactttagaaatgggctgcttgtcttaaagaatag 429
Query: 358 ccactcctgttagtggctgtataagtaatcaagctaataggctttctcaaaaaaaaaaaa 417
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 428 ccactcctgttagtggttgtataagtaatcaagctaatgggctttctcaaaaaaaaaaa- 370
Query: 418 ggaaaaaagaaa--agaaaagaaaggaaagaaagaaaaagaaaagaaagaacaagtatct 475
||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 369 --aaaaaggaaaacagaaaagaaaggaaagaaagaaaaagaaaagaaaaaacaagtatct 312
Query: 476 atctgctttctaagttttgcaacgtaaagcttattggcgaggtcaagtcttgccctatcc 535
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 311 atctgctttctaagttttgcaacataaagcttattggcgaggtcaagtcttgccctatcc 252
Query: 536 taggttactccatgttgtggaaaacaatggcgtttcaaactgtgcctcaccttgagatgc 595
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 251 taggttactccatgttgtggaaaacaatggcgtttcaaac--tgcctcaccttgagatgc 194
Query: 596 atcattttcaagcaggctttccctgcatttagga 629
||||||||||||||||||||||||||||||||||
Sbjct: 193 atcattttcaagcaggctttccctgcatttagga 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1031
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1021
Effective search space: 631999
Effective search space used: 631999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
