Query= MSMg01no521_n05.b1 MSMg01no521_n05.b1 CHROMAT_FILE:
MSMg01no521_n05.b1 PHD_FILE: MSMg01no521_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:16 2005
(498 letters)
>mm_chr3_82467224_82468121
Length = 898
Score = 824 bits (426), Expect = 0.0
Identities = 468/494 (94%), Gaps = 19/494 (3%)
Strand = Plus / Plus
Query: 5 gaattcctgggaggcgtttttctctgcatagaccttctgagagctcagaccatcagaatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gaattcctgggaggcgtttttctctgcatagaccttctgagagctcagaccatcagaatt 283
Query: 65 caaggggtcttagtcttccaggaaggtcttagtcttccaggaagtgtgtagtagggtcgg 124
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 284 caaggggtcttagtcttccaggaag-------------------tgtgtagtagggtcgg 324
Query: 125 aattaagacagtgaatggtttaaatccaactctaatgcttgtctccacggccacattgtg 184
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaagacagtgaatggtttaagtccaactctaatgcttgtctccacggccacattgta 384
Query: 185 ctactcctggggctgcagtcccctgaagcactgcgcagaccgccttgcctcgagaagtct 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctactcctggggctgcagttccctgaagcactgcgcagaccgccttgcctcgagaagtct 444
Query: 245 gcgctagagcgatcaactgcctgtgctgcttccgctgcccaggagcctcgaacagctgca 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 gcgctagagcgatcaactgcctgtgctgcttccgctgcccaggagcctctaacagctgca 504
Query: 305 cagacagggagccaagagaagtgctccaggcaacctgaatcagggcactgcggtgaatcc 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 cagacagggagccaagagaagtgctccgggcaacctgaatcagggcactgcggtgaatcc 564
Query: 365 atggcatgatgggaacgaatcctcagtgcgcctttcagccatcgccactcacaaatcagc 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 atggcatgatgggaacgaatcctcagtgctcctttcagccatcgccactcacaaatcagc 624
Query: 425 aatggcagttcaatccagaagttaccacaaggctccgagttactctctacaaagccatga 484
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aacggcagttcaatccagaagttaccacaaggctccgagttactctctacaaagccatga 684
Query: 485 tgagcgaagatcag 498
||||||||||||||
Sbjct: 685 tgagcgaagatcag 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_n05.g1 MSMg01no521_n05.g1 CHROMAT_FILE:
MSMg01no521_n05.g1 PHD_FILE: MSMg01no521_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:16 2005
(653 letters)
>mm_chr3_82516149_82517200
Length = 1052
Score = 1232 bits (637), Expect = 0.0
Identities = 649/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 1 tttactagacaagtagcaagctcattagatgcacaagatttccaaaagacctttctttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tttactagacaagtagcaagctcattagatgcacaagatttccaaaagacctttctttct 793
Query: 61 atctctcaggaattaaaagaattctccttctgttatgttggagtatgttggggattggtg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 792 atctctcaggaattaaaagaattccccttctgttatgttggagtatgttggggatgggtg 733
Query: 121 ctattctattgactaaattactgttgcatatacaggagcctgggatgcgaagagattcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctattctattgactaaattactgttgcatatacaggagcctgggatgcgaagagattcaa 673
Query: 181 tgcaggtaagaaatagattcgtaaaggagggaagctgtttgaaatactaacaatacatga 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgcaggtaagaaatagattcgt-aaggagggaagctgtttgaaatactaacaatacatga 614
Query: 241 aaacttttaattgcacttttggagaattgacctcataatccatgtgctttagacatcagt 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaacttttaatcgcacttttggagaattgacctcataatccatgtgctttagacatcagt 554
Query: 301 taaaaattctctgaggttttaactgtgagccaggagtcaaggttgcttcatttttaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taaaaattctctgaggttttaactgtgagccaggagtcaaggttgcttcatttttaacaa 494
Query: 361 gagaaactcaaattgcaagattaggctgctattgatgccagagacataaagctctccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagaaactcaaattgcaagattaggctgctattgatgccagagacataaagctctccaat 434
Query: 421 ttttgaattaaatggaaacatgtaataaattagggagaaaatgcaattcatcccaaagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttgaattaaatggaaacatgtaataaattagggagaaaatgcaattcatcccaaagta 374
Query: 481 atctaattgactcttttgcaatacttgagaacatagtgcatctaaagttcaaatcaattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atctaattgactcttttgcaatacttgagaacatagtgcatctaaagttcaaatcaattt 314
Query: 541 cccgaggcaatcaatatgacaaaagggattgaaaaacaaaagtagaacacaaatgtcttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cccgaggcaatcaatatgacaaaagggattgaaaaacaaaagtagaacacaaatgtcttg 254
Query: 601 aactgcagggctataaaaaacaggtaagtgcacagacttaagcctagattgga 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aactgcagggctataaaaaacaggtaagtgcacagacttaagcctagattgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
