NNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGAGGAAACCAAATGGCTGAGAAGCCCCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATGAAAGCAACCCTGAG
ATTCTACTTTACACCAGTTAGAATGGCTAAGATAAAAAATTCAGGTGACT
GCTAATGCTGGCAAGGATGTGTTGAAAGAGGAACCTCCATTGTTGGTAGG
ATTGCATGCTGGTACCGCCACTCTGGAAATCAGTCTGGAAATCAATCAGT
CCTGTAGAACTATGTCCTCAGAAAATTGGACATAGTTCTACAGTAAGATC
CAGCAATACCTCTCCTGGGCATATACCCAGAAGATGCTCCACCATGAAAT
GAGGACACATGCTCCACTCTGTTCATAGCAGCCTTATTAATAGTCAGAAG
CTGGAAAGAACCCAGATGTCCTTCAACAGAGGAATGAATCCAGAACATGT
GGTACATTTACACAATGGAGTACTACTTAGCTCTTAAAAAATGAATTAAT
GAAATTCTTTGGCAAATAGATGGATTTAGAGGATATCATCCCGAGTAAGG
GATCCCAATCACAAAAGAACACACATTATATGTACTCACTAATAAGCAGA
TATTAGCCCAGAAACTTAGAATACCCCAAATACAATTTTCATAACACATG
AGACTCAAGAAGAAGGAAGAACAAAGTGTAGATACTTTGTCCCCCCTTAG
AACGGGGACAAAATAC

NNNAACTATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTGCTAGATTGTCTTCGG
AAGAGTAAGGAACTGAAAGTTAACGATATTTATGGAGACTTGATACGAAC
AAAAGAAAAGATTCTGAGACAAAGGAGCTCCTCAGTAAAATTAGTATTTA
CAATTTTCTTCTGTGAAGTGTCAAGTGAAAGATATAATGAAGGAAAGAGA
GAGCAGTGGTGAGAAAGAAGACATCTTTAATGGAAAACTAGGTAAGTCAT
TACAGTTGGATTAAATGATTATGAATTCAAAGAACAAATTCACATACGCC
ATTAGGCTTTCTCTCCTGTGCACATATATGCACACACATACACACACAAA
CACACAAATACATATTCAGACATACATAAGAATAAAGGTTACTTTGCAAG
CTAAGTCATCACGAAATTTGTGCTACCCCTCCATAAATCCCAGATCTCTA
CCATGATAGTTATAAGTTAAAAGAGGAACACTCCTCCATTGCTGGTTGGA
TTGTAAGCTGGTACAACCACTCTGGAAATCTGTTTGGCAGTTCCTCAGAA
AAGTGGACATAGTTCTACAGGAAGATCCTGCAATACCACTCTTGGGCATA
TACCCCGAAGTTGCTCCAACTTGTAATAAGCACATATGCTCCACTGGGTT
CATAGCAGCCTTATTTATAATAGCAAGAAGCTGGAGAGAACCATATGTCC
CCAATAGAGGAATGGAG

Query= MSMg01no522_j21.g1 MSMg01no522_j21.g1 CHROMAT_FILE:
MSMg01no522_j21.g1 PHD_FILE: MSMg01no522_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:15 2005
         (583 letters)



>mm_chr3_42473650_42474632
          Length = 983

 Score =  810 bits (419), Expect = 0.0
 Identities = 576/717 (80%), Gaps = 135/717 (18%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttgctagattgtcttcggaagagtaaggaactgaaagttaacgatatttatggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 787 tgttttgctagattgtcttcggaagagtaaggaactgaaagttaaagatatttatggaga 728

                                                                       
Query: 61  cttgatacgaacaaaagaaaagattctgagacaaaggagctcctcagtaaaattagtatt 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 727 cttgatacgaacaaaagaaaagattctgagataaaggagctcctcagtaaaattagtatt 668

                                                                       
Query: 121 tacaattttcttctgtgaagtgtcaagtgaaag--------------------------- 153
           |||||||||||||||||||||||||||||||||                           
Sbjct: 667 tacaattttcttctgtgaagtgtcaagtgaaagatataacctaaaaatcaaaatgagaaa 608

                                                                       
Query: 154 -------------------------------------atataat---------------- 160
                                                |||||||                
Sbjct: 607 taaatagttgaaacattacagggaaaattatatatatatataatgtgtatatatatgtat 548

                                                                       
Query: 161 -------------------------------------------------------gaagg 165
                                                                  |||||
Sbjct: 547 atatatatatatatatatatatatatatatatatatatatatatgcaaaaaaaaagaagg 488

                                                                       
Query: 166 aaagagagagcagtggtgagaaagaagacatctttaatggaaaactaggtaagtcattac 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaagagagagcagtggtgagaaagaagacatctttaatggaaaactaggtaagtcattac 428

                                                                       
Query: 226 agttggattaaatgattatgaattcaaagaacaaattcacatacgccattaggctttctc 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agttggattaaatgattatgaattcaaagaacaaattcacatacgccattaggctttctc 368

                                                                       
Query: 286 tcctgtgcacatatatgcacacacatacacacacaaacacacaaatacatattcagacat 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcctgtgcacatatatgcacacacatacacacacaaacacacaaatacatattcagacat 308

                                                                       
Query: 346 acataagaataaaggttactttgcaagctaagtcatcacgaaatttgtgctacccctcca 405
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acataagaatacaggttactttgcaagctaagtcatcacgaaatttgtgctacccctcca 248

                                                                       
Query: 406 taaatcccagatctctaccatgatagttataagttaaaagaggaacactcctccattgct 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 taaatcccagatctctaccatgatagttataagttaaaagaggaacactcctccattgct 188

                                                                       
Query: 466 ggttggattgtaagctggtacaaccactctggaaatctgtttggcagttcctcagaaaag 525
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 187 ggttggattgtaagctggtacaaccactctggaaatttgtttggcagttcctcagaaaag 128

                                                                    
Query: 526 tggacatagttctacaggaagatcctgcaataccactcttgggcatataccccgaag 582
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 127 tggacatagttctacaggaagatcctgcaataccacttttgggcatataccgcgaag 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)