BAC Information

Click to search

BAC

Clone NameMSMg01-522K03
Chromosome3 (Build37)
Map Location 149,545,459 - 149,545,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522K03.T7 (MSMg01no522_k03.b1)MSMg01-522K03.TJ (MSMg01no522_k03.g1)
ACCAG593144AG593145
length644860
length of high quality
(start - end)
278 (51 - 328)---
definitionCHROMAT_FILE: MSMg01no522_k03.b1 PHD_FILE: MSMg01no522_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:16 2005CHROMAT_FILE: MSMg01no522_k03.g1 PHD_FILE: MSMg01no522_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTGTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCGCGGATTCCATCTTGAGTTTTGGCTTTTCTCCCAAGTTCATTTAGATA
CTTGGCAGAGTGCAGCTTCTGAGATTTGTGGGATAAGGTCCACATTTGTG
GGGACTGAGGAGAGTGTCAGTTCATGGATGTCCCCTGTATTCCCAGGGCC
ACTTGCCTTCTACCTTGTAAATGAAGGCCAATTTCTCACACTGAGATCCT
CATTCACTTCAGCTCTGAACCCTGCTGGATTCCAGATTCCATTCAGAGGA
TTTCTGCATCTAGGTGCAAACTCCGCTTAGAATCTTAGGTTACTACAGGG
CCTGTGCACACCCCACCCCAGATGTTAAGCCCAGGCGAGGTTCCCCTCTC
GGGTTTTAACCGAGGAGAAAAACCCCGGAGTTTTTCCAAAAAATCATTTT
TTGTTAAACAAAAAAAAATCCGGGAAAATTCCCCTTCGGGGTTTTTTTGG
GAAAAAATTTTTTTGGTTTTCCCCGGTTTTTTTTAAAATTCCCCCGAAAA
ATTTTTGTGGGGGGGGGTCCCCCAGATGTTGTTTTTTAAAAGGGGGGGGG
AAAAAAAAAACACAAAAACAAATACCCTCCCTATAAAAAAAAAA
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCATACAATCAACTGACAGTGTCGTGCGTTGT
GTTCGGAGAGTGTCGGAGGCGGGGGCGTGGGGGGGAGGGGAGAGGGGGAG
TTGGTTTTGGATTTTTTTANNGTGAAAAAAATCCCCNNNTTTTTNNATCT
TCGTACTAGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTN
NTTTTTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_k03.b1 MSMg01no522_k03.b1 CHROMAT_FILE:
MSMg01no522_k03.b1 PHD_FILE: MSMg01no522_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:16 2005
         (278 letters)



>mm_chr3_149545256_149545935
          Length = 680

 Score =  468 bits (242), Expect = e-136
 Identities = 269/278 (96%), Gaps = 7/278 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   attc-catcttgagttttggcttttctcccaagttcatttagatacttggcagagtgcag 65
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attcacatcttgagttttggcttttctcccaagttcatttagatacttggcagagtgcag 263

                                                                       
Query: 66  cttctgagatttgtgggat-aaggtccacatttgtggggactgagg-agagtgtcagttc 123
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 cttctgagatttgtgggattaaggtccacatttgtggggactgagggagagtgtcagttc 323

                                                                       
Query: 124 atggatgtcccctgtattcccagggccact-tgccttctaccttgtaaatgaaggccaa- 181
            |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| 
Sbjct: 324 gtggatgtcccctgtattctcagggcca-tgtgccttctaccttgtaaatgaaggccaaa 382

                                                                       
Query: 182 tttctcacactgagatcctcattcacttcagctctgaaccctgctggattccagattcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttctcacactgagatcctcattcacttcagctctgaaccctgctggattccagattcca 442

                                                 
Query: 242 -ttcagaggatttctgcatctaggtgcaaactccgctt 278
            |||||||||||||||||||||||||||||||||||||
Sbjct: 443 attcagaggatttctgcatctaggtgcaaactccgctt 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 680
Length adjustment: 9
Effective length of query: 269
Effective length of database: 671
Effective search space:   180499
Effective search space used:   180499
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)