Query= MSMg01no522_p01.b1 MSMg01no522_p01.b1 CHROMAT_FILE:
MSMg01no522_p01.b1 PHD_FILE: MSMg01no522_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:41 2005
(250 letters)
>mm_chr3_141597826_141598475
Length = 650
Score = 356 bits (184), Expect = e-103
Identities = 196/200 (98%)
Strand = Plus / Plus
Query: 5 gaattcatcacatattcatatatttaaagcagaagagtatttctaaactgagattacctt 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattcatcacatattcatatatttaaagcagaagaatatttctaaactgagattacctt 264
Query: 65 gttaccaatgtcaatttccgatttattttcatctggaaattccatcttcctgatttttac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttaccaatgtcaatttccgatttattttcatctggaaattccatcttcctgatttttac 324
Query: 125 attgatgatataatgtgttatctcagaatttgctggggacttgtgtgtgtgcgtgtgtgt 184
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 325 attgatgatataatgtgttatctcagactttgctggggacttgtgtgtgtgtgtgtgtgt 384
Query: 185 gtgtgtgtgtgcgtgtgtgt 204
||||||||||| ||||||||
Sbjct: 385 gtgtgtgtgtgtgtgtgtgt 404
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space: 154481
Effective search space used: 154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no522_p01.g1 MSMg01no522_p01.g1 CHROMAT_FILE:
MSMg01no522_p01.g1 PHD_FILE: MSMg01no522_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:41 2005
(650 letters)
>mm_chr3_141728166_141729216
Length = 1051
Score = 1069 bits (553), Expect = 0.0
Identities = 580/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 63 aaattaatgaaagaaaagtatgaaatcacatcagccatgaaggtctatggtgaacccagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 aaattaatgaaagaaaagtatgaaatcacatcagccatgaaggtctatggtgaacccagg 992
Query: 123 aagaatagactcaaactgaatgagcgatatcaaggaaacaagaacccacctcacattgca 182
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 991 aagaatagactcaaactaaatgagcgatatcaaggaaacaagaatccacctcacattgca 932
Query: 183 aattacagacaaatagtcacaaactaatgactctgaagaaggaaaaaacaatgatggaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 aattacagacaaatagtcacaaactaatgactctgaagaaggaaaaaacaatgatggaag 872
Query: 243 tagtatttgaaactataaccccccccaaatactctagaagtagaaaaattaaatcccaca 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tagtatttgaaactataa-cccccccaaatactctagaagtagaaaaattaaatcccaca 813
Query: 303 ctttgcatgaaaaattagtatgctactatcaatttacacatttagcccattttaacgata 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ttttgcatgaaaaattagtatgctactatcaatttacacatttagcccattttaacgata 753
Query: 363 aatccttaaggactatctactttatgatcaagccatccgtgaacagagaataggatcgga 422
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 752 aatccttaaggactatctagtttatgatcaagccatccgtgaaaagagaataggatcgga 693
Query: 423 tttacccacatttgaggcaaggcagccacagaacgaatctgggaccatcattct-aggga 481
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 692 tttacccacatttgaggcaaggcagccacagaacaaatctgggaccatcattctcaggga 633
Query: 482 aagatagggtgccgtattcaagccaaatgccaaatttgaggccttagaaagcagagttta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aagatagggtgccgtattcaagccaaatgccaaatttgaggccttagaaagcagagttta 573
Query: 542 gcagacaagagtctggtgcatgcttggctgtttttgaggagcccactcaattgtgagcta 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 572 gcagacaagagtctggtgcatgcttggctgtttttgaggagcccacccaattgtgagcta 513
Query: 602 aattcacttgatgcctggagaaacttcacttaaggggttgatggagagt 650
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aattcacttgatgcctggagaaacttcacttaaggggttgatggagagt 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
