TTATACTTATTTTTTTGTGTNAATACCCNNNCNNNTTGGTXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAGTGTGCA
CGAAGTGTGAATAANAAACATGGACAAAAGCATATCAGTTTAAGAAAAGT
ATATATTTTAAGTTTGAGAACTCTTCATGAAGAATATCAGTTTAAAAGAC
TATTCAATACAATGGGTTATTAATTGGGCCACAAGGCATTGAAATATCTT
GGGGTTTAATTTTCCCAAGAAACCTTTTTTATTTTGGTTTAAAAGGGCCC
GGGGGAAAAATTAAAAAAAACCCCCCGGGGGGAAAGGCCCCCCCCCAAAA
AATTTCCGCCCTTTTTTCCCTCCCCAAAAAAAACCTTTTTTTTAGGGGGG
TGTAAAAAAAAAAAAAGGGTTTTTTTTTTAAAAAAACTGTGGTGGGGGAA
AACAAAAATAAAAANCCGCCCCGGCTTTTTCCTGCGAGAAGATATAGGGG
TTTGTGGGCTTTTCTTTCCTCCCCTCCGCCCTTCANAGAGAAGGAAAAAA
GAAGAAGGGGGGGGGGTCTCTAGACTCTCCCGCTCCCCCCACCAGACCTC
CGCCTTTTTTTTTTTTTTTTGGGCTGTTTTGTTTCTCGCCCCCACCCAAA
CATTATG

NNTTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCTCTGCAACTGAACCCT
GAATCATATATTAACTGAGTGCTTAATACTAATTGCAATAATCTCAACTC
TGAATAAAAGAGCACAGAATTGATGATGTTTTTAATTACAATACATTTTT
AAATACCATGCTTTAACCTTATATTGAACTTTAAAAATTGCTGACGTTGT
ATTTTCTGCGACTAACAGAAAACCTTCTGTGAATAAAATAATGACATTCA
CGGGATAAGAGTGAGTAATTTTCGAATGCTGCCTCTGTGCCAAATAGGAA
ACCAGACACATCAGTAGAATGAGATAGAAATAATTATCTTTGTTATATTG
ATAAGTCATTTGAAGGCCAAAGAGCTTAAATTATGTGCAAAAGCCATAGA
GCAGGAAAGTTAGACATGTTACACTACAGGTTTATTTAAATTTTCAATCC
ATGCTATTCTCTTTGCAATCTATACATACAATTATTTAAAATTATAGAGT
AGAAATTATGAATGATAAAACCAATGTTTCTGAGATTTCAACATCCAATT
CTTGTCTTTACCCCCAGTTTAAAATTCATTTGCAAAAAAAAATTAAAGTT
TACATATTAACCAGCCAGATATTTAAATAATATTGTATTCTTTTTGTTTG
TTTGTTTTGGTTTGGTTTGGNTTTGGTTTTTGGTTCTGCTCTGAATGCTT
N

Query= MSMg01no523_b02.g1 MSMg01no523_b02.g1 CHROMAT_FILE:
MSMg01no523_b02.g1 PHD_FILE: MSMg01no523_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:52 2005
         (618 letters)



>mm_chr3_140194880_140195897
          Length = 1018

 Score = 1104 bits (571), Expect = 0.0
 Identities = 610/631 (96%), Gaps = 13/631 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattctctgcaactgaaccctgaatcatatattaactgagtgcttaatactaattgcaat 60
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattctctgccactgaagcctgaatcatatattaactgagtgcttaatactaattgcaat 260

                                                                       
Query: 61  aatctcaactctgaataaaagagcacagaattgatgatgtttttaattacaatacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcaactctgaataaaagagcacagaattgatgatgtttttaattacaatacatttt 320

                                                                       
Query: 121 taaataccatgctttaaccttatattgaactttaaaaattgctgacgttgtattttctgc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 321 taaataccatgctttaaccttatattgaactttaaaaattgctgactttgtattttctgt 380

                                                                       
Query: 181 gactaacagaaaaccttctgtgaataaaataatgacattcacgggataagagtgagtaat 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gactaacagaaaaccttctgtgaataaaataatgacattcatgggataagagtgagtaat 440

                                                                       
Query: 241 tttcgaatgctgcctctgtgccaaataggaaaccagacacatcagtagaatgagatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcgaatgctgcctctgtgccaaataggaaaccagacacatcagtagaatgagatagaa 500

                                                                       
Query: 301 ataattatctttgttatattgataagtcatttgaaggccaaagagcttaaattatgtgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataattatctttgttatattgataagtcatttgaaggccaaagagcttaaattatgtgca 560

                                                                       
Query: 361 aaagccatagagcaggaaagttagacatgttacactacaggtttatttaaattttcaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagccatagagcaggaaagttagacatgttacactacaggtttatttaaattttcaatc 620

                                                                       
Query: 421 catgctattctctttgcaatctatacatacaattatttaaaattatagagtagaaattat 480
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 621 catgctattctctttgcaatctatacatgcaatcatttaaaattatagagtagaaattat 680

                                                                       
Query: 481 gaatgataaaaccaatgtttctgagatttcaacatccaattcttgtctttacccccagtt 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gaatgataaaaccaatgtttctgagatttcagcatccaattcttgtctttacccccagtt 740

                                                                       
Query: 541 taaaattcatttgcaaaaaaaaat-------------taaagtttacatattaaccagcc 587
           ||||||||||||||||||||||||             |||||||||||||||||||||||
Sbjct: 741 taaaattcatttgcaaaaaaaaataaacaaacaaaattaaagtttacatattaaccagcc 800

                                          
Query: 588 agatatttaaataatattgtattctttttgt 618
           |||||||||||||||||||||||||||||||
Sbjct: 801 agatatttaaataatattgtattctttttgt 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)