BAC Information

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BAC

Clone NameMSMg01-523B05
Chromosome3 (Build37)
Map Location 150,031,263 - 150,114,183
singlet/doubletdoublet
Overlap geneLOC100040455
Upstream geneLOC100040620, LOC100040633
Downstream geneLOC100040463, LOC623554, Eltd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B05.T7 (MSMg01no523_b05.b1)MSMg01-523B05.TJ (MSMg01no523_b05.g1)
ACCAG593483AG593484
length741746
length of high quality
(start - end)		693 (49 - 741)666 (81 - 746)
definitionCHROMAT_FILE: MSMg01no523_b05.b1 PHD_FILE: MSMg01no523_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:52 2005CHROMAT_FILE: MSMg01no523_b05.g1 PHD_FILE: MSMg01no523_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,031,263 - 150,031,951)(150,113,752 - 150,114,183)
sequence
NAAACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCGATGTATAGGGAGGCCAGCAAACTTGGCTGACAGTCTGTTC
TTGAGGCTACTATTTTATACGATGACAACAGGAATTTTGTGTCTTATCTA
ATGCAGTTTATATGATACAATAGCAAAGTCAGTCAGAATGTTGAGAAAGA
AGCCGTGAAGCCTGCCGGTCCTAACCTTGCTAGTGGACTTACACAATGAG
ATGCTGACTTCTAATTTAGAGTAACATCTAAGGCAAGAAGTGTTTGGTTA
TTGTGTTTGCATATTTTTATAGGGGCTAATGTAATACAGATACAAATATT
GTACTGAAGTTCTGATGTTCATAAAATGTTGTCTGAGTACATTGTCTGAG
TCCTTGCCTCAAGTATAATTATCATGATTAAATATAAAACTTGAAACTTG
CACAGAGCATTTTTATTCTCTTCCTCTTATGGATCTAAAAGAACTATATA
ATTTATTTACATATTGAAAAATAAACTCATATTCATTTTCTCTGAGAAAT
CTTTCAGCATTTTAAAGTTGTGCTTACAACAGTATGTGTGCTCTTTGCAC
ATTCCCTAGAGTCAGAGCATTCACAGGTGATACTGGGAGCATCCCACAGG
AGCCACGGGAAAACTAGGAAGCTCTGTCTTTTTCTGCTTCCAGGAACACA
CTCAAACCTCCCTAGACCTTTACCTTCAATAGTCTACATCN

NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAATACACAATTTAATC
TTTTTATAGGTCCAGAGCCTCAAAATCAGGATGTTGTTGGATGACCTCAG
TTTCTTCTGAGTCATCTATACTTGATGTGCAATGTTCATATTTTTCACTA
GACTACAACTTCTTCTACCTTAGAGGGCACAAACTTTTAATCACTTCAGT
AAAGAAGAGAATTAGTAAGATTTGGTTAGACGCACCCTATTGTCTTCATT
TTAAGCCAATTACTTGTTTATATGGCCTACTTACAAATTCAGTCACACAT
TAAAGTACTATTGATAAGATATACAACGTATAAGTTTGAGTTGTCATGCA
TAATTTTCCAAAGCAGAAAAATTACCCCACCAGAAACTTTGAAATTGGCA
AATTATTCTATGAAGAAAGAAAGAAATAGATACAAAATATAATTAAGATA
AAAATAAATATAAAGGTATCAGTTAATATCTTGAATATCATCTTTGTATC
CTGCAGTACAGATTTTCTTTGTGTCACACCCATTTTGAAATATTCATGGT
TTCTAAAGCTCTCAAGAAAATGGACATGCACAGTACTTCATCTTCTGACA
GCTCCTACCTTCTTCGGACACTTTGTTCTCTTCACTTTTCAATACATGTT
CAAGGATCACCCAGCTGTTGAAATGTATACATTCTCTATACATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b05.b1 MSMg01no523_b05.b1 CHROMAT_FILE:
MSMg01no523_b05.b1 PHD_FILE: MSMg01no523_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:52 2005
         (693 letters)



>mm_chr3_150031060_150032152
          Length = 1093

 Score = 1263 bits (653), Expect = 0.0
 Identities = 680/689 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccgatgtatagggaggccagcaaacttggctgacagtctgttcttgaggctact 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccgatgtaaagggaggccagcaaacttggctgacagtctgttcttgaggctact 263

                                                                       
Query: 64  attttatacgatgacaacaggaattttgtgtcttatctaatgcagtttatatgatacaat 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attttatatgatgacaacaggaattttgtgtcttatctaatgcagtttatatgatacaat 323

                                                                       
Query: 124 agcaaagtcagtcagaatgttgagaaagaagccgtgaagcctgccggtcctaaccttgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaaagtcagtcagaatgttgagaaagaagccgtgaagcctgccggtcctaaccttgct 383

                                                                       
Query: 184 agtggacttacacaatgagatgctgacttctaatttagagtaacatctaaggcaagaagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtggacttacacaatgagatgctgacttctaatttagagtaacatctaaggcaagaagt 443

                                                                       
Query: 244 gtttggttattgtgtttgcatatttttataggggctaatgtaatacagatacaaatattg 303
           ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 444 gtttggttattgtgtatgcatatttctataggggctaatgtaatacaaatacaaatattg 503

                                                                       
Query: 304 tactgaagttctgatgttcataaaatgttgtctgagtacattgtctgagtccttgcctca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tactgaagttctgatgttcataaaatgttgtctgagtacattgtctgagtccttgcctca 563

                                                                       
Query: 364 agtataattatcatgattaaatataaaacttgaaacttgcacagagcatttttattctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agtataattatcatgattaaatataaaacttgaaacttgcacagagcatttttattctct 623

                                                                       
Query: 424 tcctcttatggatctaaaagaactatataatttatttacatattgaaaaataaactcata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctcttatggatctaaaagaactatataatttatttacatattgaaaaataaactcata 683

                                                                       
Query: 484 ttcattttctctgagaaatctttcagcattttaaagttgtgcttacaacagtatgtgtgc 543
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 ttcattttctctgagaaatctttcagcattttaaagttgtgcttccaacagtatgtgtgc 743

                                                                       
Query: 544 tctttgcacattccctagagtcagagcattcacaggtgatactgggagcatcccacagga 603
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 744 tctttgcacattccctagagtcagagcatccacaggtgatactgggagcatcccacagga 803

                                                                       
Query: 604 gccacgggaaaactaggaagctctgtctttttctgcttccaggaacacactcaaacctcc 663
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 804 gccacgggaaaactaggaagctctgtctttttctgcctccaggaacacactcaaacctcc 863

                                        
Query: 664 ctagacctttaccttcaatagtctacatc 692
           ||||| |||||||||||||||||||||||
Sbjct: 864 ctagaactttaccttcaatagtctacatc 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_b05.g1 MSMg01no523_b05.g1 CHROMAT_FILE:
MSMg01no523_b05.g1 PHD_FILE: MSMg01no523_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:52 2005
         (666 letters)



>mm_chr3_150113118_150114183
          Length = 1066

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Minus

                                                                        
Query: 235  tgtttatatggcctacttacaaattcagtcacacattaaagtactattgataagatatac 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 tgtttatatggcctacttacaaattcagtcacacattaaagtactattgataagatatac 1007

                                                                        
Query: 295  aacgtataagtttgagttgtcatgcataattttccaaagcagaaaaattaccccaccaga 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aacgtataagtttgagttgtcatgcataattttccaaagcagaaaaattaccccaccaga 947

                                                                        
Query: 355  aactttgaaattggcaaattattctatgaagaaagaaagaaatagatacaaaatataatt 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  aactttgaaattggcaaattattctatgaagaaagaaagaaatagatacaaaatataatt 887

                                                                        
Query: 415  aagataaaaataaatataaaggtatcagttaatatcttgaatatcatctttgtatcctgc 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  aagataaaaataaatataaaggtatcagttaatatcttgaatatcatctttgtatcctgc 827

                                                                        
Query: 475  agtacagattttctttgtgtcacacccattttgaaatattcatggtttctaaagctctca 534
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  agtacagattttttttgtgtcacacccattttgaaatattcatggtttctaaagctctca 767

                                                                        
Query: 535  agaaaatggacatgcacagtacttcatcttctgacagctcctaccttcttcggacacttt 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  agaaaatggacatgcacagtacttcatcttctgacagctcctaccttcttcggacacttt 707

                                                                        
Query: 595  gttctcttcacttttcaatacatgttcaaggatcacccagctgttgaaatgtatacattc 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  gttctcttcacttttcaatacatgttcaaggatcacccagctgttgaaatgtatacattc 647

                        
Query: 655  tctatacatcct 666
            ||||||||||||
Sbjct: 646  tctatacatcct 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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