BAC Information

Click to search

BAC

Clone NameMSMg01-523B10
Chromosome3 (Build37)
Map Location 12,450,745 - 12,450,873
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999, EG621965
Downstream geneLOC100039798, EG668033, LOC668037, LOC100039823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523B10.T7 (MSMg01no523_b10.b1)MSMg01-523B10.TJ (MSMg01no523_b10.g1)
ACCAG593493AG593494
length748744
length of high quality
(start - end)
698 (51 - 748)620 (81 - 700)
definitionCHROMAT_FILE: MSMg01no523_b10.b1 PHD_FILE: MSMg01no523_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005CHROMAT_FILE: MSMg01no523_b10.g1 PHD_FILE: MSMg01no523_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTACCAGACCTTCAAGGAAAAGCTAGTACAATTAACCCTCC
AATTATTTCACAGAATAGAAACAGAAGTAACACTCCCAAATTATTCTAGG
AGGCCACAGTTACCCTGATATTTAAACCACACAAAGATACCCCAGCCCCC
CAAAAAAGAACTTCAGACCAATTTCCCTTATGAACAGTGATACAAATATT
CTCCAACAAAATTCTCACAAACTTAATCTAAGAACACATCAAAAACATAG
TTAACCACAATCAAGTAGGTTTCATCCCTGGGATGCTGGGATGATTCAAT
ATTTGAAAATCCATCCATGCAATCCACCATATATATAACTCAAAAAATCA
CATGATCTCATTGCATGTGGAAAAAGTGTTCCACAATAGCCAGCACCATT
TCATGTATAAACGTCTTTAAGAGATTAGGAATTCAAGGCACATATCTAAG
CATAATAAAAGCAATAAACAGTACATACCTAACATCAAATTAAATGGAGA
GAAACTTGAGGCAGTCACATGAAAATCAGGGACAAGACAATGCTGCCCAC
ACTCTACATAGTTAATACAGTACTTGAAGTTATAGTTAGAGAAAGGAGAC
AGAAAAAGAAGTTTAAAGAAACACAGATTAGAAAGGAATAAGTCAACGTG
TCACTATTCACGTATGATATGATACTACACATATCTGACCCCCAAATT
NNTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATTTACCTCCAAGCAAG
GTAAGAATGTTTCCAGGTGAAGGCTGCAGAAAGTGCACCCTGACAAACTT
AGAAATACCCACACTCTCCATTTTGAATTTTCATAATAATGTTTGCCTTG
TTTGAAAATCTAATTTACAGAGAACCGGACAGCTTCTGGGACAGGTGGAA
GAACAGAGCCGCTGAGGCAGCACCCTTGGCAGGCTACAGACAGCCGGCCA
CCATCTGGACCAGAGGAAAGGTGTCCGCCTGGCTTGGGAGGCGGCCTCAG
CCTCAGCAGCAGCGGTCACCATCTGGGTCCCGGGACTCCGCAGAACTTAG
GAAATTAGTCTGAACAGGTTAGAGGGTGTGCCAGAGAACCAGACAGCTTC
TGAGACAGGCGGAAGCACAGAGCCGCTGAGGCAGTACCCTTTGCAGGCTG
CAGACAGCCGGCCACCATCCGGATCAGAGGACAGGTGTCCGCCTGGCTCG
GGGCCTTCTTCTTCGACCAGGAGGAGGTCCAAAAACAAGATATCTGCGAC
CTTCCCTGTAAGAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTGAAACT
CAGAGGAGAGAATCTGTCTCCCAGGTCTGCTGATAGACGGTAACAGAATC
ACCAGAAGAACAATCTCTAGACAGAGTCAACTATAACTACTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_b10.g1 MSMg01no523_b10.g1 CHROMAT_FILE:
MSMg01no523_b10.g1 PHD_FILE: MSMg01no523_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:54 2005
         (620 letters)



>mm_chr3_12450537_12451556
          Length = 1020

 Score =  234 bits (121), Expect = 1e-65
 Identities = 127/129 (98%)
 Strand = Plus / Plus

                                                                       
Query: 9   cctccaagcaaggtaagaatgtttccaggtgaaggctgcagaaagtgcaccctgacaaac 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cctccaagcaaggtaagaatgtttccaggtgaaggctgcagaaagtgcaccctgacaaac 268

                                                                       
Query: 69  ttagaaatacccacactctccattttgaattttcataataatgtttgccttgtttgaaaa 128
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 269 ttagaaatacccacaccctccattttgaactttcataataatgtttgccttgtttgaaaa 328

                    
Query: 129 tctaattta 137
           |||||||||
Sbjct: 329 tctaattta 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)