BAC Information

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BAC

Clone NameMSMg01-523G06
Chromosome3 (Build37)
Map Location 70,567,302 - 70,567,500
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523G06.T7 (MSMg01no523_g06.b1)MSMg01-523G06.TJ (MSMg01no523_g06.g1)
ACCAG593721AG593722
length788864
length of high quality
(start - end)
199 (71 - 269)293 (151 - 443)
definitionCHROMAT_FILE: MSMg01no523_g06.b1 PHD_FILE: MSMg01no523_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:17 2005CHROMAT_FILE: MSMg01no523_g06.g1 PHD_FILE: MSMg01no523_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGGCAAAAGATGGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAGGGAATTCGCAGCACACAGCATAAAGAAAGCATGTTCC
TATTGTAAATTGATCATTTTCATAATACAAACTACTAAACAAACAACAGC
AGAAACACTGTCACTGGTTGAGGTGTACTTAAAATGTTTCAGTATTTTGG
GTACGTATTAGAAGGCCTGAATTTGGCCCCTGTGAACAATCTAACTCCTC
CTCCTCCTCCTCCTCCTCCTCCACCACCTCCACCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCTTCTTCTTCTTTTTTTTTTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTACTTCATCTTCTTCTTCCTCTTCCTCTTCTTC
TTCTTCTTCTTCTATCCCTTCCTCTTCTTCTTTTTCTACCGCTTTTTTTT
ATTCTTCTTCATTTTCTTCCTCATCTTTTTTTTCTTCTCCTTCTTTTACT
ATCTTTTTTTCTCTTCCTTTATTTTTGTATTCCACTCTAATCCTTCTTAA
TTTTTTTTTTTCCTCTTTCTTTTTTACTCAACTTTTTTAAGCTCTTTCTT
CATCAGTCTTTTACCATCCCTTATATATTATTTATATTATACTTTTATTC
TCTCATTATCATCTACTTTGTCTCTCTTTTTTACTTTTTTTCTCTTTCTC
CCTTTTTTAATTTAATTTGCATCTCTCTTTATTTCATCATCCTTCGTTCC
TCCTTCCTTTTTTACCCCATATATTCCCCTCACCTCTG
GTATGGATGCTAAGAGTGGAGAGCTAGAGGCGAGGGGGGAGGCAGGAGAG
GTGGNGGGNGGNGGGGGCGAAAGNCACGATGATAXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
ATTCAGGCTCACAGTCAGCTATTGGATGGATCACAGGGTCCCCAATGGAG
GGGCTAGAGAAAGTATCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGT
GGAACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTG
CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGAAAAGAGAGGCCC
ATTGGACTTGCAAACTTTATATGCCCCAGTACAGGAGAACACCAGGGTCA
AAAAGTGGGAGTGGATGGGTAGGGGAGTGGGGGGTGTTTTGTTTTCTTNT
CTTTTCGCTTTTTTTTTTTNTTTTTTCTTTCCCCCCCTTTTTCTTTTTTT
TTTTCTTCCGCCTTCTCTCTTCTTTTTTTTCCTCTTCTTTTTTTTTGTCC
GTGTTCACTTTTTTCGGCCGTTTTCTGCTTTATTATTATTATTGTTGTTG
TAGTGGTATTCTATAATTTGCCAATTATTTTTTTTTTTCCCATTACACGT
TACCCCCTTTCTCCCGGTTTTTTCGTCCCCCCTACTTTTCTTTTTCAAAT
TTTTTTTTTTTGTTTGCGCATAATTGAATATTCCACTTATTTTATTGCTA
TCTCCGTTTATTCATAATATTATACTATACTCTATATGATTCCTTTTATT
GTTCCTCTTTCTCTTACTATATTATTTTTGTGTTGTACGTTTTATTATTA
CATCGCTCCAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_g06.b1 MSMg01no523_g06.b1 CHROMAT_FILE:
MSMg01no523_g06.b1 PHD_FILE: MSMg01no523_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:17 2005
         (199 letters)



>mm_chr3_70567127_70567725
          Length = 599

 Score =  362 bits (187), Expect = e-104
 Identities = 196/199 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagcacacagcataaagaaagcatgttcctattgtaaattgatcattttcataatacaa 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 374 gcagcacacagcataaagaaagcatattcctattgtaaattgatcattttcataatccaa 315

                                                                       
Query: 61  actactaaacaaacaacagcagaaacactgtcactggttgaggtgtacttaaaatgtttc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actactaaacaaacaacagcaaaaacactgtcactggttgaggtgtacttaaaatgtttc 255

                                                                       
Query: 121 agtattttgggtacgtattagaaggcctgaatttggcccctgtgaacaatctaactcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agtattttgggtacgtattagaaggcctgaatttggcccctgtgaacaatctaactcctc 195

                              
Query: 181 ctcctcctcctcctcctcc 199
           |||||||||||||||||||
Sbjct: 194 ctcctcctcctcctcctcc 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)