Query= MSMg01no523_h18.b1 MSMg01no523_h18.b1 CHROMAT_FILE:
MSMg01no523_h18.b1 PHD_FILE: MSMg01no523_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:24 2005
(604 letters)
>mm_chr3_147816021_147817027
Length = 1007
Score = 1137 bits (588), Expect = 0.0
Identities = 602/608 (99%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 1 caataccctttttgtaaatagatgagtaaggttgtataggtgaataaaattaggtcacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataccctttttgtaaatagatgagtaaggttgtataggtgaataaaattaggtcacag 260
Query: 61 gtaacttacatgctatgtgatttccatttgttatctctttccatcctcaaaacattgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaacttacatgctatgtgatttccatttgttatctctttccatcctcaaaacattgtag 320
Query: 121 tgatgtaagaatgtgattgcaacaattttcacaagggaatcgatcctgagtgaaaaaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatgtaagaatgtgattgcaacaattttcacaagggaatcgatcctgagtgaaaaaaaa 380
Query: 181 a---taacttcccactgtattccgtctagagaatgaaaaaatagtggcttgtccccatta 237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaataacttcccactgtattccgtctagagaatgaaaaaatagtggcttgtccccatta 440
Query: 238 acttgaccatcaaatccattttcctcattgtagtactatattgcaaaaggctattaaatt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgaccatcaaatccattttcctcattgtagtactatattgcaaaaggctattaaatt 500
Query: 298 ttacaaaattaaatcatccttaaaaacacaatcatcttatttgtttaaaataatgttgat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaaaattaaatcatccttaaaaacacaatcatcttatttgtttaaaataatgttgat 560
Query: 358 tttattttgtgttactaattacttaatcctttcttatccttaatctaaaactgctactct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattttgtgttactaattacttaatcctttcttatccttaatctaaaactgctactct 620
Query: 418 catattccagcataactaattcatttgaatatgatatatataatgtgaaccacaactttg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catattccagcataactaattcatttgaatatgatatatataatgtgaaccacaactttg 680
Query: 478 gaagaaataggcatttttttaaatcattcaaatg-tgtctcttctaaaattcaaataacc 536
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 681 gaagaaatatgcatttttttaaatcattcaaatgat-tctcttctaaaattcaaataacc 739
Query: 537 ttttatatatttaatcttgatacatatctcttgtaattaaaaatagtaataaaaatagaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttttatatatttaatcttgatacatatctcttgtaattaaaaatagtaataaaaatagaa 799
Query: 597 agattgaa 604
||||||||
Sbjct: 800 agattgaa 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1007
Length adjustment: 10
Effective length of query: 594
Effective length of database: 997
Effective search space: 592218
Effective search space used: 592218
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_h18.g1 MSMg01no523_h18.g1 CHROMAT_FILE:
MSMg01no523_h18.g1 PHD_FILE: MSMg01no523_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:24 2005
(600 letters)
>mm_chr3_147984332_147985331
Length = 1000
Score = 1160 bits (600), Expect = 0.0
Identities = 600/600 (100%)
Strand = Plus / Minus
Query: 1 ctcattaggaaagaaatatagtattgaaagaaggaacttcatgcggcacagtgtagttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctcattaggaaagaaatatagtattgaaagaaggaacttcatgcggcacagtgtagttaa 741
Query: 61 gaggaaggtcatatcctcacagacatactcacttcctccagagtggaacatgttcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaggaaggtcatatcctcacagacatactcacttcctccagagtggaacatgttcatttt 681
Query: 121 acatttccaaaattgtgcattttcacatctatgctgagaaatgattttctactgatagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acatttccaaaattgtgcattttcacatctatgctgagaaatgattttctactgatagtg 621
Query: 181 cccggttctgtctgggattagaagcaatcacgaagatgaggctaatgtaggcttacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccggttctgtctgggattagaagcaatcacgaagatgaggctaatgtaggcttacattt 561
Query: 241 atcagagcagtcactgagaaggaggtatgttagttctaagtcgataatataatattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atcagagcagtcactgagaaggaggtatgttagttctaagtcgataatataatattttgt 501
Query: 301 tatcacatataaaacatcaattatgtacatgaagggtacataattgtctgtttataaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatcacatataaaacatcaattatgtacatgaagggtacataattgtctgtttataaatc 441
Query: 361 ctgcctgggggtggtttaattctatcgccaagctgctagaaattcaattgatgcagagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcctgggggtggtttaattctatcgccaagctgctagaaattcaattgatgcagagca 381
Query: 421 aattaatggtcaattctaataacacaaactttatgagatttgggtccaaaacagaggctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aattaatggtcaattctaataacacaaactttatgagatttgggtccaaaacagaggctg 321
Query: 481 ttacaaataacactgcaattatttgtaatccttgtggtttttaataaaagagataaaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttacaaataacactgcaattatttgtaatccttgtggtttttaataaaagagataaaata 261
Query: 541 gttattatcataaggctctggctatgttaaaattttttcttaatgtgtctgtattgaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttattatcataaggctctggctatgttaaaattttttcttaatgtgtctgtattgaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
