BAC Information

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BAC

Clone NameMSMg01-523K18
Chromosome3 (Build37)
Map Location 82,103,864 - 82,104,205
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523K18.T7 (MSMg01no523_k18.b1)MSMg01-523K18.TJ (MSMg01no523_k18.g1)
ACCAG593933AG593934
length756768
length of high quality
(start - end)
527 (36 - 562)411 (76 - 486)
definitionCHROMAT_FILE: MSMg01no523_k18.b1 PHD_FILE: MSMg01no523_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:40 2005CHROMAT_FILE: MSMg01no523_k18.g1 PHD_FILE: MSMg01no523_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAATAGTGGGCGTTATACGACTCACTATTCCGAGAGGATCCGCGGAAT
TCCTGATCTTTCCAGAACTTTTATAATGAATGGGTGTTGGATCTTGTCAA
ATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCC
CTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAA
TGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCG
ATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTT
CTCTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTA
GAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAACTGGAATT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGTCTGGTCC
TGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAG
GTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTTGGT
ACCTGGTATCTGTCGAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGGTT
TGTTGAGTATAGCCTTTTTTATAATGATCTGATGGTGGTTTGGATTTCTT
CAGGATCTGGTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGG
ATTCTG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGGGTCTAGTGGGGCAACTGGCC
TTTCATGCAGAGGGCTGCAATCATGCACAGGAATACCAAGAGAGCATGGG
GGGATGGGGCAGGAGAGAGAAGGGGTGTCACTTAGAAAGTTCAAGTGCTG
TGAAGCTTCTAGCTTGAGGGAAAAAAGACAATAAAACCAAGCAACCGCTG
GCTGTCCATCACACAAAGAATACTTTGACACCAAGGTTTTTTTTAAGAAA
GTAAAAGCTCTTGTTGCAGGCTAAATGTACACCCCAAATTTGTCAGGCTT
CTCCTTACAGGGAGAGGGGGTGGCAATAGTGGGAAGTTTGGGGTCTCTTT
GCACAGGCACAGTCCAGATACTTCTAATATAGCATCTAGTGTCTCTCCTT
CCCCCCCCCCCCCCCTCCGGGGTGGGGGGAAGTATCACCTCCTTGCAGAA
TTCTGAGTCTGTGAAGTCAACGCTGCAGTATAGCTGATCCCTGAAAGCTG
CACTGGGGAAAACCACAGACACCTCTCTGGCTAGACCCTTCCTAGGGGGC
GGCATTGTGCTGATACCTCATGTAAGCCCCTTGGAATTCTTCTCTGAGGA
ATTCCCCTTGATTAAGTCAGGGGAGGAGGCCCCTCCCGGATTATGGGGGG
TATACTTCATGGCTGGGCCTCCACCCCTGGGAAAGAAGTTGTTTTGGCTC
CATACAAAAAGTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_k18.g1 MSMg01no523_k18.g1 CHROMAT_FILE:
MSMg01no523_k18.g1 PHD_FILE: MSMg01no523_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:40 2005
         (411 letters)



>mm_chr3_82103596_82104413
          Length = 818

 Score =  542 bits (280), Expect = e-158
 Identities = 326/344 (94%), Gaps = 10/344 (2%)
 Strand = Plus / Plus

                                                                       
Query: 69  gcatggggggatgggg-caggagagagaaggggtgtcacttagaaagttcaagtgctgtg 127
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcatggggggatgggggcaggagagagaaggggtgtcacttagaaagttcaagtgctgtg 328

                                                                       
Query: 128 aagcttctagcttgaggg-aaaaaagacaataaaaccaagcaaccgctggctgtccatca 186
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 329 aagcttctagcttgaggggaaaaaagacaataaaaccaagcaaccgctggctgtccacca 388

                                                                       
Query: 187 cacaaagaa-----tactttgacaccaaggttttttttaagaaagtaaaagctcttgttg 241
           |||||||||     ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 389 cacaaagaagtcaatactttgacaccaaggttttttttaagaaagtaaaagcttttgttg 448

                                                                       
Query: 242 caggctaaatgtacaccccaaatttgtcaggcttctccttacagggagagggggtggcaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 caggctaaatgtacaccccaaatttgtcaggcttctccttacagggagaaggggtggcaa 508

                                                                       
Query: 302 tagtgggaagtttggggtctctttgcacaggcacagtccagatacttctaatatagcatc 361
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 509 tagtgggaagtttggggtgtctttgcacaggcacaatccagatacttctaatatagcatc 568

                                                       
Query: 362 tagtgtctctccttccccccccccccccctccgg-ggtgggggg 404
           ||||||||||||||||| ||||| | ||| |||| || ||||||
Sbjct: 569 tagtgtctctccttccctcccccacaccc-ccggagg-gggggg 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 818
Length adjustment: 9
Effective length of query: 402
Effective length of database: 809
Effective search space:   325218
Effective search space used:   325218
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)