BAC Information

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BAC

Clone NameMSMg01-523L18
Chromosome3 (Build37)
Map Location 84,671,848 - 84,737,552
singlet/doubletdoublet
Overlap geneLOC624889
Upstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
Downstream geneFbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523L18.T7 (MSMg01no523_l18.b1)MSMg01-523L18.TJ (MSMg01no523_l18.g1)
ACCAG593981AG593982
length764762
length of high quality
(start - end)		599 (43 - 641)506 (71 - 576)
definitionCHROMAT_FILE: MSMg01no523_l18.b1 PHD_FILE: MSMg01no523_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:45 2005CHROMAT_FILE: MSMg01no523_l18.g1 PHD_FILE: MSMg01no523_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,737,140 - 84,737,552)(84,671,848 - 84,672,353)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCTAGTCCTGTTTAATCCAAAGGTTAGAGAAAAGCTCTCAGTTTGG
TTTTGGGTATTGTGTTTATTGGCACAATGTAGGTGGATATCGGCAGCAGG
ACAACTAACACAAAGTAACAAGATGTAAACACAAGCAACAGTCCACATGC
CTTGCCATTCTCAGATCAGCTGGTCAAAAACAAAGATATCTCAAGTTCTT
TTTGTTTTTACTTTTATTTAATCCTCCCTCTCCCTCTCTCTCCCTCTCCC
ACCCCTCTTCTGGTCCACCCTCCGACTGTTCCACATCCAGTACCTCCTCC
CCCCATCTCCACAGAATGTCCCCAACCACCACCACTCCACCAGACCTCCC
CAACTCCCTGGGGCCTCCAGTCTCTTGAGGGTTAGGTGCATCTTCTCTGA
CTGAGTCCAGACCCGGCAGTCCTCTGCTGTATGGGGGCCTCATATCAGCT
GGTGTATGCTGCCTGGTTGGTGATCCAGTGTCTGAGAGATCTCAGGGGTC
CAGGTTAATTGAGACTGCTGGTCCTCCTATAAGGTCACCCTCCTCCTCAG
CTTCTTCCACCTTTTCCCTAATTCAACCACGGGGGCCAGCAGCTTCTGTC
CATTGGTTGGGTGTAAATATCTACATCTCACTCTTTCAGCTACTTGTTGA
GTCTTTTAGAATGTGGTCATGATAGGCCCCTTTTTGTGAGCACTCCATAG
CCTCAGTAATAGTA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTTTTCAAAGGGCTCAAGAAGAATACTTA
GGAGTGAATAGATAAAGCATAGAGGCACTTTAAAGATGCAGGAGAGAGTT
TTAGGGCTGTCTGGAAGGAGAGTTAATTAAGTAACAAAACAAGTGTTTAG
CAGTGAGGAGAGTCAATTAGCTTAGAGTAATAAAAGCCATCAACTGGAAG
GATGGGAGGATGAAGAGTCTAAGTCAGAGGCCTGCGAGAGGATTGCTAGC
CTGTGATGGCATAGGACGATAAATAATGGCTGCAGACTCAATTCAGGGGG
AAGTGTCAGCCTACAAAAGCAGGAAGTTCAGGCAGAATCAACATAAAAGA
GTCCACATTTAGCCAAGTAAGTGGTCTAGCTGCTCAGTTGCAGAGAAAAT
CTTGTAAGCACTAATAGAGAAAGAAGTTATCATGTTGGCTAGTTGAGGAA
CTAGACATTCAGTGAGCTGAAAGAAAACCTAAAAGATGCGAATTTGTTAC
CGTAATTTGAAAGTAAAATAAAGACATGTTCAGATAAACACTGGGGTTTT
CTATCATCCCACCACACTTATGAACAGTTCTATAGGAAATTGATTGGTTT
GAAGGGAAATAGCCCCAGAAGTCATATCGAAGCTAGTAAATACATAATGT
ACTATATTTTTCTAATTATAAAAAGCTATATGATTTCCTTACTGTAAAAA
TGACTAACTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_l18.b1 MSMg01no523_l18.b1 CHROMAT_FILE:
MSMg01no523_l18.b1 PHD_FILE: MSMg01no523_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
         (599 letters)



>mm_chr3_84737140_84738138
          Length = 999

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctctagtcctgtttaatccaaaggttagagaaaagctctcagtttggttttgg 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 413 gaattctctctagtcctgtttaatccaaaggttagagaaaaactctcagtttggttttgg 354

                                                                       
Query: 65  gtattgtgtttattggcacaatgtaggtggatatcggcagcaggacaactaacacaaagt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 353 gtattgtgtttattggcacaatgtaggtggatatcggcagcaggacaactaacagaaagt 294

                                                                       
Query: 125 aacaagatgtaaacacaagcaacagtccacatgccttgccattctcagatcagctggtca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 aacaagatgtaaacacaagcaacagtccacatgccttgccattctcagatcagctggtca 234

                                                                       
Query: 185 aaaacaaagatatctcaagttctttttgtttttacttttatttaatcctccctctccctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aaaacaaagatatctcaagttctttttgtttttacttttatttaatcctccctctccctc 174

                                                                       
Query: 245 tctctccctctcccacccctcttctggtccaccctccgactgttccacatccagtacctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tctctccctctcccacccctcttctggtccaccctccgactgttccacatccagtacctc 114

                                                                       
Query: 305 ctccccccatctccacagaatgtccccaaccaccaccactccaccagacctccccaactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 113 ctccccccatctccacagaatgtccccaaccaccaccactccaccaggcctccccaactc 54

                                                                
Query: 365 cctggggcctccagtctcttgagggttaggtgcatcttctctgactgagtcca 417
           ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 53  cctggggcctctagtctcttaagggttaggtgcatcttctctgactgagtcca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no523_l18.g1 MSMg01no523_l18.g1 CHROMAT_FILE:
MSMg01no523_l18.g1 PHD_FILE: MSMg01no523_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:45 2005
         (506 letters)



>mm_chr3_84671648_84672553
          Length = 906

 Score =  940 bits (486), Expect = 0.0
 Identities = 501/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttttcaaagggctcaagaagaatacttaggagtgaatagataaagcatagaggcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttcaaagggctcaagaagaatacttaggagtgaatagataaagcatagaggcactt 260

                                                                       
Query: 61  taaagatgcaggagagagttttagggctgtctggaaggagagttaattaagtaacaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagatgcaggagagagttttagggctgtctggaaggagagttaattaagtaacaaaac 320

                                                                       
Query: 121 aagtgtttagcagtgaggagagtcaattagcttagagtaataaaagccatcaactggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgtttagcagtgaggagagtcaattagcttagagtaataaaagccatcaactggaag 380

                                                                       
Query: 181 gatgggaggatgaagagtctaagtcagaggcctgcgagaggattgctagcctgtgatggc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgggaggatgaagagtccaagtcagaggcctgcgagaggattgctagcctgtgatggc 440

                                                                       
Query: 241 ataggacgataaataatggctgcagactcaattcagggggaagtgtcagcctacaaaagc 300
           | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggaccataaataatggctgcagactcaattcagggggaagtgtcagcctacaaaagc 500

                                                                       
Query: 301 aggaagttcaggcagaatcaacataaaagagtccacatttagccaagtaagtggtctagc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aggaagttcaggcagaatcaacataaaagagtccacatttagctaagtaagtggtctagc 560

                                                                       
Query: 361 tgctcagttgcagagaaaatcttgtaagcactaatagagaaagaagttatcatgttggct 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttagttgcagagaaaatcttgtaagcactaatagagaaagaagttatcatgttggct 620

                                                                       
Query: 421 agttgaggaactagacattcagtgagctgaaagaaaacctaaaagatgcgaatttgttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttgaggaactagacattcagtgagctgaaagaaaacctaaaagatgcgaatttgttac 680

                                     
Query: 481 cgtaatttgaaagtaaaataaagaca 506
           ||||||||||||||||||||||||||
Sbjct: 681 cgtaatttgaaagtaaaataaagaca 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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