Query= MSMg01no523_n13.b1 MSMg01no523_n13.b1 CHROMAT_FILE:
MSMg01no523_n13.b1 PHD_FILE: MSMg01no523_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:54 2005
(500 letters)
>mm_chr3_94664463_94665362
Length = 900
Score = 754 bits (390), Expect = 0.0
Identities = 399/402 (99%)
Strand = Plus / Minus
Query: 99 gtgcgtatgagtgttttccctgaacatatgtatgcgcaccacagggatgcctggtgtcta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gtgcgtatgagtgttttccctgaacatatgtatgcgcaccacagggatgcctggtgtcta 841
Query: 159 tggaggtcagaaggcatcaggtcttctgaaagtgaagttacagacacagttgtgagctga 218
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 tggaggtcagaaggtatcaggtcttctgaaagtgaagttacagacacagttgtgagctga 781
Query: 219 catataggtgctgggaattgaacctgggtcctgtgctagaacaacaaatgctcttcttgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 catataggtgctgggaattgaacctgggtcctgtgctagaacaacaaatgctcttcttgg 721
Query: 279 gtaagccacctctctagtcctgagtgaagcctttctaattttaagtttcccaatgatgat 338
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtaagccagctctctagtcctgagtgaagcctttctaattttaagtttcccaatgatgat 661
Query: 339 ttctgttcagactttaatcaactcaacagacctctcaggtgtatgaaaatatcatgtagc 398
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttctgttcagacttgaatcaactcaacagacctctcaggtgtatgaaaatatcatgtagc 601
Query: 399 catgatgctatgctgggcacttcataggcaggatcccgtgaaacagtccagagaaactca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 catgatgctatgctgggcacttcataggcaggatcccgtgaaacagtccagagaaactca 541
Query: 459 gttcaacagacagaactctaacagtgatgaagaccctgtcca 500
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gttcaacagacagaactctaacagtgatgaagaccctgtcca 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_n13.g1 MSMg01no523_n13.g1 CHROMAT_FILE:
MSMg01no523_n13.g1 PHD_FILE: MSMg01no523_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:54 2005
(266 letters)
>mm_chr3_94624403_94625068
Length = 666
Score = 472 bits (244), Expect = e-137
Identities = 257/266 (96%), Gaps = 8/266 (3%)
Strand = Plus / Plus
Query: 1 taatactgttgctaaagcagtgaccaagtatgtcagattgttttatctggagtacctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatactgttgctaaagcagtgaccaagtatgtcagattgttttatctggagtacctaac 260
Query: 61 agcatcctgaattaagcacacaatgtctcctgacactgtcaaccagcaacatgaggctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatcctgaattaagcacacaatgtctcctgacactgtcaaccagcaacatgaggctaa 320
Query: 121 tttctgctacactaagacagcaagaacaccttttttttttttttttttttttttgcagga 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tttctgctacactaagacagcaagaacacctttttttttttttttta--------cagga 372
Query: 181 aagtaaaatattctaaatctgaatgtaaattacttatcagtaagaaattttaaattgatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagtaaaatattctaaatctgaatgtaaattacttatcagtaagaaattttaaattgatc 432
Query: 241 tgggtgggctacacccagctgaacta 266
||||||||||||||||||||||||||
Sbjct: 433 tgggtgggctacacccagctgaacta 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
