CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCAGTAAGAATGTTGCCTATTCAGTGACATTCAGATTTGCCTCTAGTAT
TGTAAGAGAAATAGTTAAAGAAATCAGGCATTACCATCTACCATTAAGAG
TCAGAAATCTCAGGGCAAGCTACTCCCATACGCAGGAATTTACCATTATC
TAAGAAGGATTGTTGTGGTCTAAGAAGGAACCAGAGTAGATATTTGAACT
ATAGATAGCAGAGTTATACCCAGACACAGGAATTTACAATGGCCTAGGGG
GAAGGTGGACTAGATAGACTAGAATTGGAACTATAGCAAGGGCATGATGC
CCTTGCCCCTGACTTCTAAGATTAAACTGACCTTAGGTGGGGCTGCTTTA
ATCCCAGTTGTTAACATTGATTTTTATCCCAGTTGATTCCTGTTAGCTTT
TAGTATGCATTCCTCGGTTTTGTATAAAAGTCACTTATAAGACTGGTGCT
AGCTTTGAGACAAATTACATTCAGATCCACACTCCTTTGTGTTGTGTCTG
TTTGTCACCCCCTTTTCATCACCAACTCCACTGCCCACCTGTCCAGAACC
CAGAGTTCTCCCGCAGATTGAGGGAGGCCCAACTGAGGCCTGTCCGTGGC
AAGAGCTCATTCTCTCACCGGTGATAGGCACCCAGCATCATCTCCGCCAC
AGTAGCCACCCAGCATCACCTCAGCCACAGTAGCCACCAGCATCATCTCA
GCCACAGGCAGCACCCAGCATCATCTCAGCCAC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCTGTGGGGCTAAAGCAAGG
TTAGGCTCAGGTTAGTAGGAAGGACACCAGCTATCTTATGGTCTGTGCTT
AACAAAGGCAGGTAGATCTCTGAATTCTTTTTCAAGATTTAAAAAAAAAA
AAAAAAAAAAGGGTATACATCATCCTTTTCCTAAGAGTCAAGGGGCTTAG
GAAACCCTTTTAGGTCCTGTAATGCTGATTTGTGAGGTGGTCTACAGGGA
ACCTGTAAATGACTGGATTGATATGTAAAACAAAAACAAAAACAAAAAAC
TGGGCTTTTGGTCTGCAAGAGATTAATTAGCAGAGAATGATAGTTTTTTG
TTGTTGTTTTTTTTTTTTTTATAATAGTAGCAAGAGCTGAGCTGTCTAGA
GATTTCTGGAGATCGAATACAGCTCTTTTAGAATTTTTTTTCTAACAGAA
TTTCTGACCTTAGTTGTAAACCCAAGAATTGCTTGGTGGGGAAACAGCTC
TTTTAGATTTTTTTTTCTAGAATATCCACGAATATTTTATAGCAGCTTTC
CTGACTTTGGTTGGAAAACCCATGAGCTATCCAGAGAGTTTTTAGAAATT
GTTCTAGCAAGAGGGAGCTGTCTGGAGCAGATTACAGAGCTATCTACAGA
GAGCTGTCTAGGGAGCCATCTTCAGCAGTCTACAAGGCTGTCAGCTTGTA
CCCACGATTTGACTTTGAGTCATTTGT

Query= MSMg01no523_n22.g1 MSMg01no523_n22.g1 CHROMAT_FILE:
MSMg01no523_n22.g1 PHD_FILE: MSMg01no523_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:56 2005
         (614 letters)



>mm_chr3_9640975_9641991
          Length = 1017

 Score =  855 bits (442), Expect = 0.0
 Identities = 524/584 (89%), Gaps = 55/584 (9%)
 Strand = Plus / Minus

                                                                        
Query: 84   tagatctctgaattctttttcaagatttaaaaaaaaaaaaaaaaaaaa----gggtatac 139
            ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 1017 tagatctctgaattctttttcaagatttaaaaaaaaaaaaaaaaaaaaaagggggtatac 958

                                                                        
Query: 140  atcatccttttcctaagagtcaaggggcttaggaaacccttttaggtcctgtaatgctga 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  atcatccttttcctaagagtcaaggggcttaggaaacccttttaggtcctgtaatgctga 898

                                                                        
Query: 200  tttgtgaggtggtctacagggaacctgtaaatgactggattgatatgtaaaacaaaaaca 259
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 897  tttgtgaggtggtctacagggaacctgtaaatgactgaattgatatgtaaaacaaaaaca 838

                                                                        
Query: 260  aaaac-------------------aaaaaactgggcttttggtctgcaagagattaatta 300
            |||||                   |||||||||||||||||||||||||||||||||| |
Sbjct: 837  aaaacaaaaataaaaacaaaaaaaaaaaaactgggcttttggtctgcaagagattaatca 778

                                                                        
Query: 301  gcagagaatgatagttttttgttg--------ttgttttttttt---------------- 336
            ||||||||||||||||||||||||        ||||||||||||                
Sbjct: 777  gcagagaatgatagttttttgttgttattgttttgtttttttttttttttgtttttttgt 718

                                                                        
Query: 337  -----tttttataatagtagcaagagctgagctgtctagagatttctggagatcgaatac 391
                 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  ttttgttttttttatagtagcaagagctgagctgtctagagatttctggagatcgaatac 658

                                                                        
Query: 392  agctcttttagaattttttttctaacagaatttctgaccttagttgtaaacccaagaatt 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  agctcttttagaattttttttctaacagaatttctgaccttagttgtaaacccaagaatt 598

                                                                        
Query: 452  gcttggtggggaaacagctcttttaga-tttttttttctagaatatccacgaatatttta 510
            ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 597  gcttggtggggaaacagctcttttagattttttttttctagaatatccacaaatatttta 538

                                                                        
Query: 511  tagcagctttcctgactttggttggaaaacccatgagctatccagagagtttttagaaat 570
            |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 537  tagcagctttcctgactttggttggaaaacccatgagctatcc--agagtttttagaaat 480

                                                        
Query: 571  tgttctagcaagagggagctgtctggagcagattacagagctat 614
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479  tgttctagcaagagggagctgtctggagcagattacagagctat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1017
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1007
Effective search space:   608228
Effective search space used:   608228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)