Query= MSMg01no523_o14.b1 MSMg01no523_o14.b1 CHROMAT_FILE:
MSMg01no523_o14.b1 PHD_FILE: MSMg01no523_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:59 2005
(685 letters)
>mm_chr3_40610089_40611173
Length = 1085
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%), Gaps = 2/683 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctaacttagagcgcatattcagcatgtgtatatgtatgtaaccctgggttct 63
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 204 ggaattctctaacttagagcgcatattcagcatgtgtatatgtatatagccctgggttct 263
Query: 64 gtccccaacccttccttccaataattggtttatgggatttttt-cccccctctttagttc 122
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 gtccccaacccttccttccaataattggtttatgggatttttttcccccctctttagttc 323
Query: 123 caatcatcattgtctaggaaaaactccttttccatctgcagaccagacacctcagatgga 182
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 324 caatcatcattgtctaggaaaaactccttttccatttgcagaccagacacctcagatgga 383
Query: 183 aatggtacagcagtggtttgggaatctgcaaatgaatggtgagtttttaatggagtattt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatggtacagcagtggtttgggaatctgcaaatgaatggtgagtttttaatggagtattt 443
Query: 243 aattaaaatgtaatgacctagaactcgcaaacattgcagttttctacttctatctaagaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattaaaatgtaatgacctagaactcgcaaacattgcagttttctacttctatctaagaa 503
Query: 303 aaccattgcttgagatttggaatatttatacttttactccttaatatttaacatatataa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaccattgcttgagatttggaatatttatacttttactccttaatatttaacatatataa 563
Query: 363 ttattttcttaagttttcattgtaaataggaacaaagctatttatacatgagcaaactgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttattttcttaagttttcattgtaaataggaacaaagctatttatacatgagcaaactgt 623
Query: 423 acacagatcttggtttgcacagcttctctgtgattaggcggaagagccaggattcttaag 482
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 acacagatcttggtttgcacagcttctctgtgatgaggcggaagagccaggattcttaag 683
Query: 483 tagtcctagcttaggctagatgctgctgccttctgttctgcttatgcctgtgtcaaaatc 542
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 684 tagtcctagcttaggctagatgctgctgc-ttctgttctgcttatgcctgtgtcaaaatc 742
Query: 543 agctgttaatgcaacacataaagtcatcaaaagatgcttcacttgtaagaagctgatgtg 602
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agctgttattgcaacacataaagtcatcaaaagatgcttcacttgtaagaagctgatgtg 802
Query: 603 aaaattttagtctgccaatagttactcatattgaaacctaaatgtttaagcgggtgtccc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaattttagtctgccaatagttactcatattgaaacctaaatgtttaagcgggtgtccc 862
Query: 663 taggtcattattagtaatgtgga 685
|||||||||||||||||||||||
Sbjct: 863 taggtcattattagtaatgtgga 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_o14.g1 MSMg01no523_o14.g1 CHROMAT_FILE:
MSMg01no523_o14.g1 PHD_FILE: MSMg01no523_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:59 2005
(407 letters)
>mm_chr3_40748046_40748852
Length = 807
Score = 766 bits (396), Expect = 0.0
Identities = 405/408 (99%), Gaps = 1/408 (0%)
Strand = Plus / Minus
Query: 1 tttaaattcccc-ggaaaactatgaactcctaatcatctgacctgtagttcccaagtgct 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttaaattccccgggaaaactatgaactcctaatcatctgacctgtagttcccaagtgct 455
Query: 60 ggaattacaggcctgtgtcatcacactcagttaatatccttggtgaatggtaaccacttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaattacaggcctgtgtcatcacactcagttaatatccttggtgaatggtaaccacttt 395
Query: 120 ctagtccttacaagttaagagacatgattgtcattcccttccatactagttctgtgagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctagtccttacaagttaagagacatgattgtcattcccttccatactagttctgtgagag 335
Query: 180 ccaaagttatgttgtaagttttactatgcctaagaggtctgtcttagggttttactgctg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ccaaagttatgttgtaagttttactatgcctaagaggtctgtcttagggttttactgcta 275
Query: 240 tgaacagacactatgtatggccaatgtaagtcttaaaaggacaatatttaattggggctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgaacagacactatgtatggccaatgtaagtcttaaaaggacaatatttaattggggctg 215
Query: 300 gcttacaggttcagaggttcagtccattatcatcaaggcctgagcatggcagcatccagg 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 214 gcttacaggttcagaggttcagtccattatcatcaagacctgagcatggcagcatccagg 155
Query: 360 caggcgtggtgcaggcagagctgagagttctacatcttcatctgaagg 407
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 caggcgtggtgcaggcagagctgagagttctacatcttcatctgaagg 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
