Query= MSMg01no523_o22.b1 MSMg01no523_o22.b1 CHROMAT_FILE:
MSMg01no523_o22.b1 PHD_FILE: MSMg01no523_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:01 2005
(608 letters)
>mm_chr3_17481778_17482784
Length = 1007
Score = 1145 bits (592), Expect = 0.0
Identities = 601/604 (99%), Gaps = 1/604 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcaaaggaaaaaaaaaagaaaccctattactcaggcaagataaaacaagcctt 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattcagcaaaggaaaaaaaaaa-aaaccctattactcaggcaagataaaacaagcctt 749
Query: 65 ttcttaccctcaaatcattttttgaatcaaatatgtggttcttgttatcttccaaaggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttcttaccctcaaatcattttttgaatcaaatatgtggttcttgttatcttccaaaggag 689
Query: 125 aaataaaaaatttaaaatgtttcttgttatcgaaaatcttcaaaataatttcatattgta 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 688 aaataaaaaatttaaaatgtttcttgttatcgaaaatcttcaaaatattttcatattgta 629
Query: 185 tttttgctaacgtttcactttatgcttccattctgtaccttttggtggggacatcctatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttttgctaacgtttcactttatgcttccattctgtaccttttggtggggacatcctatg 569
Query: 245 tgccttaaaatgggaatgtaacttgataaaaggaccaatgaaagaattaaacatttgagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgccttaaaatgggaatgtaacttgataaaaggaccaatgaaagaattaaacatttgagt 509
Query: 305 gaaagtgaacaaacaaatttttcagatgctgtgcttgaaaaataacataaacagtattta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaaagtgaacaaacaaatttttcagatgctgtgcttgaaaaataacataaacagtattta 449
Query: 365 tatagaaagtcttttagacacactacattgttggttctgtggaccagaaatatccatctg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gatagaaagtcttttagacacactacattgttggttctgtggaccagaaatatccatctg 389
Query: 425 agggagtcagactccttaatgctgactttttccagtctaatcattacgagcatattagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agggagtcagactccttaatgctgactttttccagtctaatcattacgagcatattagca 329
Query: 485 agtaagacaatgtcaaaggctgcactaaaaatgacacacttccatgtagaatcatggaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agtaagacaatgtcaaaggctgcactaaaaatgacacacttccatgtagaatcatggaaa 269
Query: 545 gatggctactagataaaaaaggtaattaaaataaagaaagtgataaaattcatgtaattt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gatggctactagataaaaaaggtaattaaaataaagaaagtgataaaattcatgtaattt 209
Query: 605 gtag 608
||||
Sbjct: 208 gtag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space: 596206
Effective search space used: 596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_o22.g1 MSMg01no523_o22.g1 CHROMAT_FILE:
MSMg01no523_o22.g1 PHD_FILE: MSMg01no523_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:01 2005
(611 letters)
>mm_chr3_17347967_17348977
Length = 1011
Score = 1120 bits (579), Expect = 0.0
Identities = 606/621 (97%), Gaps = 10/621 (1%)
Strand = Plus / Plus
Query: 1 tgaaaagagactttaacctagaataggtacagatttgtattttcctagaagggttctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgaaaagagactttaacctagaataggtacagatttgtattttcctagaagggttctctc 250
Query: 61 atttaaagatgctgggatggcattcttttaacctctgagttttctaagatagttgataca 120
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 251 atttaaagatgctgggatgacattcttttaacctctgagttttctaagataattgataca 310
Query: 121 caattgcaggagtgaatgctttaatgataaatgtttaattgggaatttttttcattctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caattgcaggagtgaatgctttaatgataaatgtttaattgggaatttttttcattctta 370
Query: 181 tgtttagaggagacaagtctattttgtaaagtttctttttagaaatgacaataaagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtttagaggagacaagtctattttgtaaagtttctttttagaaatgacaataaagggaa 430
Query: 241 ccatatgggtttgacttaactaaattggtgaaaatggtattttatatttatatgaacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ccatatgggtttgacttaactaaattggtgaaaatggtattttatatttatatgaacaga 490
Query: 301 aatctgaagttatatgtatattttcatgctaatatgagagagtctaaggcagaaacatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatctgaagttatatgtatattttcatgctaatatgagagagtctaaggcagaaacatcc 550
Query: 361 caacttgaggccagcattagatacacagtaagactatgtctcaaaaaccaaaattaaact 420
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 551 caacttgaggccagcattaggtatacagtaagactatgtctcaaaaaccaaaattaaact 610
Query: 421 acaaaagtaaaaggaaatatgtttaggaaatc----------aaaccatttgcaaacata 470
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 611 acaaaagtaaaaggaaatatgtttaggaaatctatttctttcaaaccatttgcaaacata 670
Query: 471 tagtctgcataaattataaactgattattctgaagaagcattcatcgttacaaataatat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tagtctgcataaattataaactgattattctgaagaagcattcatcgttacaaataatat 730
Query: 531 atgtatgggattgttcacacccacatatgatcgtttcttctcacttctcagcttgtcctg 590
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atgtatgggattgttcacactcacatatgatcgtttcttctcacttctcagcttgtcctg 790
Query: 591 tgttaaattactttcacagac 611
|||||||||||||||||||||
Sbjct: 791 tgttaaattactttcacagac 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
