Query= MSMg01no524_d13.b1 MSMg01no524_d13.b1 CHROMAT_FILE:
MSMg01no524_d13.b1 PHD_FILE: MSMg01no524_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:25 2005
(647 letters)
>mm_chr3_127192205_127193251
Length = 1047
Score = 1205 bits (623), Expect = 0.0
Identities = 641/647 (99%)
Strand = Plus / Minus
Query: 1 acagagtgagatcttgtctcgaaacaaaacaacaaaatggaagaacagtgtgtaattatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 acagagtgagatcttgtctcgaaacaaaacaacaaaatggaagaacagtgtgtaattatc 649
Query: 61 gaatataggtaagtctttgaaagagtggagaggcggatcattcccgggagtaccactgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaatataggtaagtctttgaaagagtggagaggcggatcattcccgggagtaccactgtt 589
Query: 121 tcatcaaaggctgctttttactcatccatatctgacgtccacaacgtgggaaactcaagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccatcaaaggctgctttttactcatccatatctgacgtccacaacgtgggaaactcaagg 529
Query: 181 cgataaacacaatagggacttttgacctgtggtatacaatttccagttaagctttattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cgataaacacaatagggacttttgacctgtggtatacaatttccagttaagctttattat 469
Query: 241 attttgctaattcttgtttgtttcctttttaatgttgcctgcttgcctgggggttataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 attttgctaattcttgtttgtttcctttttaatgttgcctgcttgcctgggggttataac 409
Query: 301 tgagtgagtgataaaccctgagctcaacttctaaaacgaaacctagggcagaagaccact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgagtgagtgataaaccctgagctcaacttctaaaacgaaacctagggcagaagaccact 349
Query: 361 ttgtggagtggttgttctctcttctgccaggttctcagcctgactgaacccaggctggct 420
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 348 ttgtggagaggttgttctctcttctgccaggttctcagcctgactgaactcaggctggct 289
Query: 421 gtcagcttgcatggtggggccctgtgagcatccatcgagtacccatggagccatctgatt 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 gtcagcttgcatggtggggccctgtaagcatccatcgagtacccatggagccatctgatt 229
Query: 481 agccccaggtagtttttctttgttttgttttatttttaatgtgtatgagagttttgcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 agccccaggtagtttttctttgttttgttttatttttaatgtgtatgagagttttgcctc 169
Query: 541 catgtatacccactcatcaagtatatgtctcctgccctcggaggtcaggggtgggcactg 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 168 catgtatacccactcatcaagtatatgtctcctgcccttggaggtcaggggtgggcattg 109
Query: 601 gaaaacctggaactggatttacaagtggttgtgagtgctgtacggat 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gaaaacctggaactggatttacaagtggttgtgagtgctgtacggat 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_d13.g1 MSMg01no524_d13.g1 CHROMAT_FILE:
MSMg01no524_d13.g1 PHD_FILE: MSMg01no524_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:26 2005
(668 letters)
>mm_chr3_127037331_127038398
Length = 1068
Score = 1187 bits (614), Expect = 0.0
Identities = 656/670 (97%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 1 cagtgtttggaaccagagtcaaaaagctctgtttgatctctacaataaatatacttacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtttggaaccagagtcaaaaagctctgtttgatctctacaataaatatacttacta 260
Query: 61 ggtagtttagtaataactttttatcttactgaaactcatcacagtgctttccttttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtagtttagtaataactttttatcttactgaaactcatcacagtgctttccttttttat 320
Query: 121 agaatttcagacaacactaaaatggatacaggaaagaaaaagtcatggtttttgttttta 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 321 agaatttcagacaacactaaaatggatacaggaaagaaaaagtcatgtttttt-ttttta 379
Query: 181 -tgttgtgggcataaaatttcataataggcagacattatgccaagtatatttagtcttag 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgttgtggacataaaatttcataataggcagacattatgccaagtatatttagtcttag 439
Query: 240 tagttaaactaatcaaagtcatgtaccaagaaattaaactgtaaaacctcaaccacaaaa 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 tagttaaactaatcaaagtcatgtaccaagaaattaaactctaaaacctcaaccacaaaa 499
Query: 300 tacccagttgctacctctggtcctgtctctagatgacgcaggtaaagacatgtgtgacta 359
|||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 tacccaattgctgcctctggtcctgtctctagatgacgcaggtaaagacaggtgtgacta 559
Query: 360 ggctgatattaatgtcctgtgtgcctgtgtgcatccctccagacttcctctccgtgggag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggctgatattaatgtcctgtgtgcctgtgtgcatccctccagacttcctctccgtgggag 619
Query: 420 agttacaggagtagaattttgcttgcgatctcttcggcagaaacgaatgactcataaagg 479
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 620 agttacaggagtagaattttgcttgcgatctcttcagcggaaacgaatgactcataaagc 679
Query: 480 aagccagtattcagcacactagaggtttgactta-cctagttaccaaaaggaattatgtt 538
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 680 aagccagtattcagcacactagaggtttgacttatcc-agttaccaaaaggaattatgtt 738
Query: 539 tgaaggagccccagcgcgggtttcccagttttcaaaaatggtatcactttggaaaattca 598
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaaggagccccagcacgggtttcccagttttcaaaaatggtatcactttggaaaattca 798
Query: 599 tccaaaaaggagaaaaatattttgaactaaaagcattttctgttttcagtccctcatgtg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tccaaaaaggagaaaaatattttgaactaaaagcattttctgttttcagtccctcatgtg 858
Query: 659 tcatatccat 668
||||||||||
Sbjct: 859 tcatatccat 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
