Query= MSMg01no524_f16.b1 MSMg01no524_f16.b1 CHROMAT_FILE:
MSMg01no524_f16.b1 PHD_FILE: MSMg01no524_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:36 2005
(571 letters)
>mm_chr3_102881622_102882593
Length = 972
Score = 868 bits (449), Expect = 0.0
Identities = 535/573 (93%), Gaps = 21/573 (3%)
Strand = Plus / Plus
Query: 4 ggaattc-acagaaaaacagacacttttgggccaccgctaccccaaatgatgaaactggg 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacagaaaaacagacacttttgggccaccgctaccccaaatgatgaaactggg 263
Query: 63 tcttacatcctgaaggtttgaggattattcactgtcagggttgtggagctcagccttgtt 122
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttacatcctgaaggtctggggattattcactgtcagggttgtggagctcagccttgtt 323
Query: 123 tcttcattttaagaatgggaaaactttggctgggtggtggtggcgcatgcctttaatcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttcattttaagaatgggaaaactttggctgggtggtggtggcgcatgcctttaatcct 383
Query: 183 agcacttgggaggcaggggcaagtggatctcttagttcaaggccagcctggtctacaaga 242
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 384 agcacttgggaggcaggggcaagtggatctctgagttcaaggccatcctggtctacaaga 443
Query: 243 gtgaattccgggacagccaggacgacacagagaaaccctgtcttgaaaaaagaaagggaa 302
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 444 gtgaattccgggacagccaggatgacacagagagaccctgtcttgaaaaaagaaagggaa 503
Query: 303 gcaaaacaaagcaagcaaacagaatggggagacgtgggctgagtccatgcagtccctgga 362
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 gcaaaacaaagcaagcaaacagaatggggagatgtgggctgagtccatgcagtccctgga 563
Query: 363 acccaccacatggtggaaggagcaagctgacaccccaaggtgtgctctgcccctctctct 422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 acccaccacatggtggaaggagcaagctgacaccccaaggtgtgctctgcctctctctct 623
Query: 423 ctctctctctctctctctctct--ctctgtctgtctgtctctg--tccctctgtctctgt 478
|||||||||| ||||||| ||| ||||||| |||||||||| || |||||||||||
Sbjct: 624 ctctctctctgtctctctttctgcctctgtccctctgtctctgtttctttctgtctctgt 683
Query: 479 ccctttctgtctctgtgcctctgttctgcctctctctgtctctgtctgtctgactgtctg 538
|| ||||| || ||||||| ||||||||||||||||||| ||| |||
Sbjct: 684 gcc--tctgt-tc--tgcctct-----------ctctgtctctgtctgtctgtctgactg 727
Query: 539 tctgtctgtctcacattcacacacacacggggt 571
|||||||||||||||||||||||||||||||||
Sbjct: 728 tctgtctgtctcacattcacacacacacggggt 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_f16.g1 MSMg01no524_f16.g1 CHROMAT_FILE:
MSMg01no524_f16.g1 PHD_FILE: MSMg01no524_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:36 2005
(601 letters)
>mm_chr3_103018554_103019554
Length = 1001
Score = 975 bits (504), Expect = 0.0
Identities = 579/630 (91%), Gaps = 43/630 (6%)
Strand = Plus / Minus
Query: 5 ccagtatggtctacagaatgagttccaagatagccagtgttacacagagaaaccctatct 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 798 ccagtatggtctacagaatgagttccaagatagccagtgttacacagagaaaccctattt 739
Query: 65 caagaaaacaaacaaacaaataaataaataaacaaacaatcaaaatgtctattaagtaat 124
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 738 caaaaaaacaaacaaacaaacaaataaataaacaaacaatcaaaatgtctattaagtaat 679
Query: 125 taacaatgatcaaaaaatataatgtaacaaacctatatttggctctaaaactccctcctc 184
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 678 taacaatgatcaaaaaagataatgtaacaaacctatatttggctctgaaactccctcctc 619
Query: 185 agacagacagtcctcttttctca---------gttttgaactc-ttttttttccctgtga 234
||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 618 agacagacagtcctcttttctcagtgcggcgggttttgaactctttttttttccctg--- 562
Query: 235 tgcttcatggatcaaacgtggctgacgaggaaagatgtgattctcatttcctgtgtaagt 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 -------tggatcaaacgtggctgacgaggaaagatgtgattctcatttcctgtgtaagt 509
Query: 295 ctgtagaacctggtatgtgctgccccagtgggctttagacagttgcctttggactgagat 354
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 508 ctgtagaacctggtatgtgctgccccagtgggctttagaccgttgcctttggactgagat 449
Query: 355 tgtggtaatatggggaaaccttgctgctaaggtcaaagtctgacattagcagaaggccct 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgtggtactatggggaaaccttgctgctaaggtcaaagtctgacattagcagaaggccct 389
Query: 415 gagctcagtgcaaaatgtcagactccctttgtcagtagggcttcttctctgaccttgtct 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 gagctcagtgcaaaatgtcagactccctttgtctgtagggcttcttctctgaccttgtct 329
Query: 475 -----------------------tctacctgcagaacatcacatagccttggttaggtta 511
|||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggggagctcaaactcttctaccttctacctgcagaacatcacatagccttggttaggtta 269
Query: 512 caggttcagcttcctttctcccagtaagagcccattcagcaagcagctctgattcctgga 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caggttcagcttcctttctcccagtaagagcccattcagcaagcagctctgattcctgga 209
Query: 572 aagcctccccatgctagtgaggtcattagc 601
||||||||||||||||||||||||||||||
Sbjct: 208 aagcctccccatgctagtgaggtcattagc 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
