Query= MSMg01no524_g16.b1 MSMg01no524_g16.b1 CHROMAT_FILE:
MSMg01no524_g16.b1 PHD_FILE: MSMg01no524_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:41 2005
(675 letters)
>mm_chr3_50139868_50140941
Length = 1074
Score = 1284 bits (664), Expect = 0.0
Identities = 670/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttcactgtattctgttctttagaaataccaacagtatttccctatggattatt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcactgtaatctgttctttagaaataccaacagtatttccctatggattatt 263
Query: 64 ttctctgttcttcctctcccagaactgcacaatagaattgattggtctagcatagattct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctctgttcttcctctcccagaactgcacaatagaattgattggtctagcatagattct 323
Query: 124 gaataatatgactctcattcatatgagagacagaaatttgctattataattcagtatgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaataatatgactctcattcatatgagagacagaaatttgctattataattcagtatgat 383
Query: 184 ttcgaggggatcactcacctgcagtgtggcagaacctattctgacaaatgtacagtctgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcgaggggatcactcacctgcagtgtggcagaacctattctgacaaatgtacagtctgt 443
Query: 244 gccaaagctttcagcagctcatggatggtgaaacaagtgattccaacaagaagttcctcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccaaagctttcagcagctcatggatggtgaaacaagtgattccaacaagaagttcctcc 503
Query: 304 aggagctgtaaggactacaccctgaaagagagtttagacaggtgattttctatggagatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggagctgtaaggactacaccctgaaagagagtttagacaggtgattttctatggagatt 563
Query: 364 gaagactgaatatctagaggctataatacacaaactcggaatgtttttttcttatctgat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaagactgaatatctagaggctataatacacaaactcggaatgtttttttcttatctgat 623
Query: 424 ttgtgttttcaacattttgtaagttattattttaataacttttatcaatttattattgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgtgttttcaacattttgtaagttattattttaataacttttatcaatttattattgct 683
Query: 484 tattatttattgttgcatcattggcaattggtttaactcctgtttatccctgccaatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tattatttattgttgcatcattggcaattggtttaactcctgtttatccctgccaatgaa 743
Query: 544 acagaagaaaaatttatcttcactatgaaaccaggttttcaatgcatagtcttaaaaact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acagaagaaaaatttatcttcactatgaaaccaggttttcaatgcatagtcttaaaaact 803
Query: 604 tagttggttataaattttgctgttttaaaatatttttttgtattatcctttgcatttgct 663
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 tagttggttataaattttgctgttttaaaatatttttt-gtattatcctttgcatttgct 862
Query: 664 taaagctagatt 675
||||||||||||
Sbjct: 863 taaagctagatt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_g16.g1 MSMg01no524_g16.g1 CHROMAT_FILE:
MSMg01no524_g16.g1 PHD_FILE: MSMg01no524_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:41 2005
(630 letters)
>mm_chr3_50260132_50261161
Length = 1030
Score = 1218 bits (630), Expect = 0.0
Identities = 630/630 (100%)
Strand = Plus / Minus
Query: 1 tactcccaaatttcatgttgtgatccttctctgtatgtgtgtagctcacattgaatctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tactcccaaatttcatgttgtgatccttctctgtatgtgtgtagctcacattgaatctga 771
Query: 61 ctagttttgcgctgattaatagataatgcatatgaatctatgttagagactgcaatccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctagttttgcgctgattaatagataatgcatatgaatctatgttagagactgcaatccca 711
Query: 121 atccttcctgttctggtaatgctttcatttgcagccatatcctgtggtgaactcctttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atccttcctgttctggtaatgctttcatttgcagccatatcctgtggtgaactcctttga 651
Query: 181 acaatattttgccagtacaaagtatgtagtacagagcctctgacaaatgaccctattagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acaatattttgccagtacaaagtatgtagtacagagcctctgacaaatgaccctattagt 591
Query: 241 cacactgtctatctgcctttcatagcaatgagggggtggacctgttccagagattgtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cacactgtctatctgcctttcatagcaatgagggggtggacctgttccagagattgtaag 531
Query: 301 atttcctgctgctcaagaacaaggattgccggcccaggttgaaacttgcttgtgattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 atttcctgctgctcaagaacaaggattgccggcccaggttgaaacttgcttgtgattcca 471
Query: 361 gtaggatgactcagtgttttgatgggactcaaggtccacaattccctggcagtctgagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtaggatgactcagtgttttgatgggactcaaggtccacaattccctggcagtctgagat 411
Query: 421 cgtgagatggaaacgccacatgaattttggtattcaaatacctacgactcttctttgtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cgtgagatggaaacgccacatgaattttggtattcaaatacctacgactcttctttgtat 351
Query: 481 cctccccatagtttttcttacatcgcctttatacattttcatggattatccatacttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cctccccatagtttttcttacatcgcctttatacattttcatggattatccatacttctt 291
Query: 541 aaaatggtagttctcaaacactaagatctgaaggaagcacaggagggattctgaaaggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aaaatggtagttctcaaacactaagatctgaaggaagcacaggagggattctgaaaggct 231
Query: 601 tgtttatggatgatctgagtttccttaata 630
||||||||||||||||||||||||||||||
Sbjct: 230 tgtttatggatgatctgagtttccttaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
