BAC Information

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BAC

Clone NameMSMg01-524H11
Chromosome3 (Build37)
Map Location 56,460,816 - 56,589,677
singlet/doubletdoublet
Overlap genenone
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524H11.T7 (MSMg01no524_h11.b1)MSMg01-524H11.TJ (MSMg01no524_h11.g1)
ACCAG594537AG594538
length777770
length of high quality
(start - end)		658 (40 - 697)610 (67 - 676)
definitionCHROMAT_FILE: MSMg01no524_h11.b1 PHD_FILE: MSMg01no524_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:45 2005CHROMAT_FILE: MSMg01no524_h11.g1 PHD_FILE: MSMg01no524_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,589,493 - 56,589,677)(56,460,816 - 56,461,425)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TACTCAGGATATCACAGGGATATGTACAAAGACTGTAAGAAGCAAAATTG
GAAACAACCAGATTGTCTATCTTCAGTTGAATGGCTAAGGTTATTTTAAT
ACTGACGTGACGATATGGAATAAATAGAATATGATCAATAAACACACTTG
CAATTTTATAATAAAGGAAAGAAACACTCTCGAGCGCGCCCCCAACTCGC
CAGCAAGAACGACGCCACAGCAGGATCCTTCTGCACACGTTTATTCAGTC
CTATTTCTTCTTTCTCTATATATCTCCCTTGTTTATATCTCCCCTGCTTA
TATCTCTCCCTCGTTTATATCTCCCAATAATAACAATCCTCTCTCGAATA
ATAATCCTCCCTCTAACCCGGGCCTCTCACTCTTTTATACTCTCAGTTCC
CGTCCACATACAGCAGGCCACGCCGCCTCACCAGGCACGCAGCTTCAGCT
AATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGAATCC
TGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGTC
AGGTGCAAGTCATACGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTGC
CGCCACACCCGCTCCCCACAATTCCCCCTTTTTTCTTTTTTGGCAGAGAG
AATGTCTGTAGATAGCCCCCAGCAGCCATGCCCCCTTACCGTCCTTTGGT
GACAACAGCATTGGTTTGATCCCTGCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATCTGGTTCATCTGAGTATTTCTTTCTCAAAA
TCTCACCTATCCACATTGGCAATCAGAGTTTTGACTAGGCTAGAGTTGCA
GACTCTTGTGAAAGCTTTATCTAGGGAGGCTGTGCTCCTAAACTGACCCA
CATGGATCGTTCTGAAGGAATCAGTTGGAATAAGATTGTTGGAATCATTG
CCTGAGAACTCTCTCAACATAGTTCAAACCCAGGTTCTCTACAGATATGG
TTAGTGCTCCAAATCACTGAACCATCCTTTCAATCCCCTAAGAATCTATT
TCCAGTCTTGTAAGAAACTAGTCCATGTGCTATTAACATTTTTCTTCATT
CTTTAATCCTTTTTTACAATCTAGTCGTCATGCCCCTCCTGGTCTGCACC
CCCCCAACTGCTCCCCATCCCATACCTCCTTCCCCATCCAAGAGGATGTC
CCCACCCTCCCAACCCCACCTCACTAGATCTCCCCACTTCCTGGGGCCTC
AAGTCTCTCTAGGGTTAGGTACATCTTCTCTCACTGAGGCCAGACTAGGC
AGTTCTCTGCTGTATCTGTGTTGAGGAGGGGGGAGAGGGGCCAAGGAGCT
CATATCAGCTACTGTATGCTGTCTGGTTGGTGGCTCAATGTCTGAAAGAT
CTCTGGGGTCCAGGTCAGTTTAGACTGCTTGTCTTTCCATGGAGCCATCC
TCCTCCTCAGCTTCTTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_h11.b1 MSMg01no524_h11.b1 CHROMAT_FILE:
MSMg01no524_h11.b1 PHD_FILE: MSMg01no524_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:45 2005
         (658 letters)



>mm_chr3_56589289_56590346
          Length = 1058

 Score =  350 bits (181), Expect = e-100
 Identities = 184/185 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctactcaggatatcacagggatatgtacaaagactgtaagaagcaaaattggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattcctactcaggatatcacagggatatgtacaaagactgtaagaagcaaaattggaa 330

                                                                       
Query: 65  acaaccagattgtctatcttcagttgaatggctaaggttattttaatactgacgtgacga 124
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 329 acaaccagattgtctatcttcagttgaatggctaaggttattttagtactgacgtgacga 270

                                                                       
Query: 125 tatggaataaatagaatatgatcaataaacacacttgcaattttataataaaggaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tatggaataaatagaatatgatcaataaacacacttgcaattttataataaaggaaagaa 210

                
Query: 185 acact 189
           |||||
Sbjct: 209 acact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no524_h11.g1 MSMg01no524_h11.g1 CHROMAT_FILE:
MSMg01no524_h11.g1 PHD_FILE: MSMg01no524_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:45 2005
         (610 letters)



>mm_chr3_56460616_56461625
          Length = 1010

 Score = 1149 bits (594), Expect = 0.0
 Identities = 606/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctggttcatctgagtatttctttctcaaaatctcacctatccacattggcaatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatctggttcatctgagtatttctttctcaaaatctcacctatccacattggcaatcag 260

                                                                       
Query: 61  agttttgactaggctagagttgcagactcttgtgaaagctttatctagggaggctgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttttgactaggctagagttgcagactcttgtgaaagctttatctagggaggctgtgct 320

                                                                       
Query: 121 cctaaactgacccacatggatcgttctgaaggaatcagttggaataagattgttggaatc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaaactgacccacatggatggttctgaaggaatcagttggaataagattgttggaatc 380

                                                                       
Query: 181 attgcctgagaactctctcaacatagttcaaacccaggttctctacagatatggttagtg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 attgcctgagaactctctcaacataattcaaacccaggttctctacagatatggttagtg 440

                                                                       
Query: 241 ctccaaatcactgaaccatcctttcaatcccctaagaatctatttccagtcttgtaagaa 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaaatcactgaaccatcctttcagtcccctaagaatctatttccagtcttgtaagaa 500

                                                                       
Query: 301 actagtccatgtgctattaacatttttcttcattctttaatccttttttacaatctagtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 501 actagtccatgtgctattaacatttttcttcattctttaatccttttttacaatctagtt 560

                                                                       
Query: 361 gtcatgcccctcctggtctgcacccccccaactgctccccatcccatacctccttcccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcatgcccctcctggtctgcacccccccaactgctccccatcccatacctccttcccca 620

                                                                       
Query: 421 tccaagaggatgtccccaccctcccaaccccacctcactagatctccccacttcctgggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaagaggatgtccccaccctcccaaccccacctcactagatctccccacttcctgggg 680

                                                                       
Query: 481 cctcaagtctctctagggttaggtacatcttctctcactgaggccagactaggcagttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcaagtctctctagggttaggtacatcttctctcactgaggccagactaggcagttct 740

                                                                       
Query: 541 ctgctgtatctgtgttgaggaggggggagaggggccaaggagctcatatcagctactgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgctgtatctgtgttgaggaggggggagaggggccaaggagctcatatcagctactgta 800

                     
Query: 601 tgctgtctgg 610
           ||||||||||
Sbjct: 801 tgctgtctgg 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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