Query= MSMg01no525_b20.b1 MSMg01no525_b20.b1 CHROMAT_FILE:
MSMg01no525_b20.b1 PHD_FILE: MSMg01no525_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:36 2005
(607 letters)
>mm_chr3_126135951_126136957
Length = 1007
Score = 1120 bits (579), Expect = 0.0
Identities = 598/605 (98%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 5 gaattccactgggttgatatgtttgttcttatgtcaataccatgaaaattttattatact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccactgggttgatatgtttgttcttatgtcaataccatgaaaattttattatact 262
Query: 65 atgcaatacaatgtgaaatctgaatctccaacagttctttttattattcaggatgtttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgcaatacaatgtgaaatctgaatctccaacagttctttttattattcaggatgtttta 322
Query: 125 actatccagagtttttgtgttgccacatgaacttgaaattgtttctattttttttt--aa 182
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct: 323 actatccagagtttttgtgttgcaacatgaactttaaattgtttctattttttttttaaa 382
Query: 183 ttttggtgaagaaatgtgttggaattttgatgggggctgttgcttttggtgggatagtca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttttggtgaagaaatgtgttggaattttgatgggggctgttgcttttggtgggatagtca 442
Query: 243 tttcccaatattaatcctattgattcttgagcataagcatcaagttgcctccattgttag 302
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 443 tttcccaatattaatcctatcgattcttgagcataagcatcaagttgcctccatttttag 502
Query: 303 tggtttcttaattatgactaggaaaataataaagtataagatggaggtctttccatctta 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 tggtttcttaattatgactaggaaaataataaagtataagatggaggtctttccatttta 562
Query: 363 tggtattttccttaatttcttagttttgtctcatcttaaatttttatttggcatttgctt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggtattttccttaatttcttagttttgtctcatcttaaatttttatttggcatttgctt 622
Query: 423 tataatagtacacaaatgtgcacttgtataaactgaggcacgtgcttcaatagtaaacag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tataatagtacacaaatgtgcacttgtataaactgaggcacgtgcttcaatagtaaacag 682
Query: 483 ttttctctttatgttctgatttgcatagcgtagaattattatttctcagaatttgcctgc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttttctctttatgttctgatttgcatagcgtagaattattatttctcagaatttgcctgc 742
Query: 543 tgccttaatgtaatataatttcttattagcactttagttcttctttctcattagtatgtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgccttaatgtaatataatttcttattagcactttagttcttctttctcattagtatgtt 802
Query: 603 ttctc 607
|||||
Sbjct: 803 ttctc 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_b20.g1 MSMg01no525_b20.g1 CHROMAT_FILE:
MSMg01no525_b20.g1 PHD_FILE: MSMg01no525_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:36 2005
(617 letters)
>mm_chr3_126281121_126282137
Length = 1017
Score = 1170 bits (605), Expect = 0.0
Identities = 614/617 (99%)
Strand = Plus / Minus
Query: 1 catgctttcatgaaggaccaggatagaaagttatgatgagaactttttctgcatcacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 catgctttcatgaaggaccaggatagaaagttatgatgagaactttttctgcatcacctt 758
Query: 61 cctctctgcctttgctcacatgacttgcctatggtcagagctgcatcttacatctttagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cctctctgcctttgctcacatgacttgcctatggtcagagctgcatcttacatctttagc 698
Query: 121 tgattgcctaacatttctggacattaagaagccagctcctggaacttagctaaggagaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgattgcctaacatttctggacattaagaagccagctcctggaacttagctaaggagaac 638
Query: 181 taggaaattcactccctaggggtttttgttgctagacaatgaaactaagtgttaacacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taggaaattcactccctaggggtttttgttgctagacaatgaaactaagtgttaacacag 578
Query: 241 gaatatggatattgatgttttgagctggtctgaatctattagttcagattcaagaaatgg 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 577 gaatatggatattgatgttttgagctagtctgaatctattagttcagattcaagaaatgg 518
Query: 301 acatttctgggccagccaagtgtttattttgttgtaaattgcgattataactgtaaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acatttctgggccagccaagtgtttattttgttgtaaattgcgattataactgtaaggaa 458
Query: 361 gaaaaccatcttaacacactgccaagagtgccgtctctggatgttgtcatgtgcaatgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaaaccatcttaacacactgccaagagtgccgtctctggatgttgtcatgtgcaatgta 398
Query: 421 tgcctgcaaacatgtgactacaaagacactcaaatgaactatgtactccggtgggtatgc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 397 tgcctgcaaacatgtgactacaaagacactcaaatgaactatgtactccggtgggtgtgc 338
Query: 481 ttcttgtccacagcgataaagaaaataagagatggcttgctgtttctccagctggaagaa 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 337 ttcttgtccacagcgataaagaaaataagagatggcttgctgttcctccagctggaagaa 278
Query: 541 aagtaaatacagacccaaggatggctcttcaaacaccctagatgctacagataagaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aagtaaatacagacccaaggatggctcttcaaacaccctagatgctacagataagaaaaa 218
Query: 601 tgatagcttttcccaca 617
|||||||||||||||||
Sbjct: 217 tgatagcttttcccaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
