Query= MSMg01no525_e19.b1 MSMg01no525_e19.b1 CHROMAT_FILE:
MSMg01no525_e19.b1 PHD_FILE: MSMg01no525_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:52 2005
(669 letters)
>mm_chr3_119548170_119549237
Length = 1068
Score = 1220 bits (631), Expect = 0.0
Identities = 655/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Minus
Query: 7 gaattcagctctactggccacactccagtgcagagggctggagggcatttaacacactga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattcagctctactggccacactccagtgcagagggctggagggcatttaacacactga 809
Query: 67 gaaaggtcagagtcagactgtatcggtttctgaacctaagaaattccaaactcctcgcta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaaaggtcagagtcagactgtatcggtttctgaacctaagaaattccaaactcctcgcta 749
Query: 127 cccattaaaatgaatgaagaaaagctgtgttgtgatgtgtggcgtcccaaagacttgctt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cccattaaaatgaatgaagaaaagctgtgttgtgatgtgtggcgtcccaaagacttgctt 689
Query: 187 gaggcaagggaaagaagctatgatgcttagcctgtgagactcgcagcgttcgcgttcggc 246
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 688 gaggcaagggaaagaagctatgatgcttagcctgtgagactcacagcgttcgcgatcggt 629
Query: 247 gccttccagagcatataaagaaagcgtggtgctgtgtgcgctctcatccctgagacgtta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gccttccagagcatataaagaaagcgtggtgctgtgtgcgctctcatccctgagacgtta 569
Query: 307 taatctcacgagtcatgtgccgcttaaataatggagattccaacatggaaaatacattac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 taatctcacgagtcatgtgccgcttaaataatggagattccaacatggaaaatacattac 509
Query: 367 tgcagttggctctgcgttcttggcagatattccaaaaacaaaatagcaaaaatgagtttg 426
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgcagttggccctgcgttcttggcagatattccaaaaacaaaatagcaaaaatgagtttg 449
Query: 427 tgatttgaattgattgcaaaatggatttttttatgcaaaagactgggaccagacttcagt 486
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 448 tgatttgaattgattgcaaaatggattttttcatgcaaaagactggaaccagacttcagt 389
Query: 487 taggggagagtccacagtaattttgcaggatactagcttctgagaaaacatttccactat 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taggggagagtccacagtaattttgcaggatactagcttctgagaaaacatttccactat 329
Query: 547 gatcaaaggtagcaaactctgaagttgggcttttgtgttgggggcaaaacagatctaaat 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gatcaaaggtagcaaactctgaagttgggcttttgtgttgggggcaaaacagatctaaat 269
Query: 607 tgtacgttgtagttttagatgtaaggtatgccctccactaaagctgtaacctaacttgct 666
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 268 tgtacgttgtagttttagatgtaaggtatgccctccactaaagct-aaacctaacttgct 210
Query: 667 cca 669
|||
Sbjct: 209 cca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_e19.g1 MSMg01no525_e19.g1 CHROMAT_FILE:
MSMg01no525_e19.g1 PHD_FILE: MSMg01no525_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:52 2005
(565 letters)
>mm_chr3_119402283_119403239
Length = 957
Score = 938 bits (485), Expect = 0.0
Identities = 534/559 (95%), Gaps = 19/559 (3%)
Strand = Plus / Plus
Query: 1 ctgagtgtaagaatgagtgggtctctgatttttgtgcctttggaggggggggcgctattt 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 ctgagtgtaagaatgagtgggtctctgatttttgtgcctttgg-------ggcgctattt 260
Query: 61 tccttctgttggtttgctttgtccaactttaatgtaatgatttgtcttatcttaattata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttctgttggtttgctttgtccaactttaatgtaatgatttgtcttatcttaattata 320
Query: 121 tttaaaaatttttaaaatctgtatgtactatagtttaattaagaatagcattgacgtaat 180
||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ttttaaaattttttaaatctgtatgtactatagtttaattaagaatagcattgaagtaat 380
Query: 181 tgttgggaaatttttccatcaatacaggggtgagtagatgacagaacttttagaattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttgggaaatttttccatcaatacaggggtgagtagatgacagaacttttagaattcaa 440
Query: 241 agaattactttgagaaacaggcagccgggatataatagttagtttgtgctatttagctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaattactttgagaaacaggcagccgggatataatagttagtttgtgctatttagctga 500
Query: 301 tgtcaatggttagttttctcact--ctgaatagcaagatctaacttactgaaattccctg 358
||||||||||||||||||||||| || || || ||||||||||||||||||||||
Sbjct: 501 tgtcaatggttagttttctcacttact---ta--aat-tctaacttactgaaattccctg 554
Query: 359 aattttcaccagaatatagaaagcaaattaaagatgaaatgaaaagacagtaagtaagta 418
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 aattttcaccagaatatagaaaggaaattaaagatgaaatgaaaagacagtaagtaag-- 612
Query: 419 agggccctgacttcctagcactttctaacactctgtctttttcttatagttattacactt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 --ggccctgacttcctagcactttctaacactctgtctttttcttatagttattacactt 670
Query: 479 ttgtaaaaaatagctctcatctcttaattgtaatacaacattgttttgtataggaagaag 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttgtaaaaattagctctcatctcttaattgtaatacaacattgttttgtataggaagaag 730
Query: 539 aggaagaggaagaggagga 557
|||||||||||||||||||
Sbjct: 731 aggaagaggaagaggagga 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 957
Length adjustment: 10
Effective length of query: 555
Effective length of database: 947
Effective search space: 525585
Effective search space used: 525585
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
