Query= MSMg01no525_i15.b1 MSMg01no525_i15.b1 CHROMAT_FILE:
MSMg01no525_i15.b1 PHD_FILE: MSMg01no525_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:11 2005
(600 letters)
>mm_chr3_99947000_99948000
Length = 1001
Score = 1123 bits (581), Expect = 0.0
Identities = 596/601 (99%), Gaps = 1/601 (0%)
Strand = Plus / Plus
Query: 1 tcacagaactagctacacaactgaataaaaacactacatagaggctaacagtagagagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacagaactagctacacaactgaataaaaacactacatagaggctaacagtagagagca 260
Query: 61 atgcctctggcatctagtctcaattcctctcccatataattcccgtatcccaaaagattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcctctggcatctagtctcaattcctctcccatataattcccgtatcccaaaagattc 320
Query: 121 acttactgtcggctggtcttctttggccacgctctcctcatactctgcttccctttgctg 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttactgccggctggtcttctttggccacgctctcctcatactctgcttccctttgctg 380
Query: 181 ccaagagacacacataagttataatgaggg-aaacagactctgcagagcgactgaggcag 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ccaagagacacacataagttataatgaggggaaacagactctgcagagcgactgaggcag 440
Query: 240 cgggagggcttctctcaaagcatgatgccaacggcacctgtgtccacctggaccgtgtgg 299
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 cggaagggcttctctcaaagcatgatgccaacggcacctgagtccacctggaccgtgtgg 500
Query: 300 ccctggccttggaaatgccttctgtgtgagctgtaactacactgggtagaaaacctcagc 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 ccctggccttggaaatgccttctgtgtgagctgtaactacactgggtggaaaacctcagc 560
Query: 360 agggacagtctgtaagtggcccccaccaaacgtgaagccacactcaaaggttttaccatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggacagtctgtaagtggcccccaccaaacgtgaagccacactcaaaggttttaccatt 620
Query: 420 tccctttcttcctcgagaataagaggctctctcgttctctcccagagtctcagcgacttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccctttcttcctcgagaataagaggctctctcgttctctcccagagtctcagcgacttg 680
Query: 480 tcatgagatgctgatacaacgtagtctccactggggctgacagccaaacaccatatttcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatgagatgctgatacaacgtagtctccactggggctgacagccaaacaccatatttcc 740
Query: 540 tggtggtgtccctggacacagataaaacaaaatgacccaaggaaatctaacttactcatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtggtgtccctggacacagataaaacaaaatgacccaaggaaatctaacttactcatt 800
Query: 600 g 600
|
Sbjct: 801 g 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_i15.g1 MSMg01no525_i15.g1 CHROMAT_FILE:
MSMg01no525_i15.g1 PHD_FILE: MSMg01no525_i15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(548 letters)
>mm_chr3_100136379_100137326
Length = 948
Score = 1021 bits (528), Expect = 0.0
Identities = 543/548 (99%)
Strand = Plus / Minus
Query: 1 cagggcttcttgtagctgtcctccagtctctggtgtctgctcttcctgagataatgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cagggcttcttgtagctgtcctccagtctctggtgtctgctcttcctgagataatgtgct 689
Query: 61 aggtggtactctactggtaatgttctagaagtttgattcaggaatacacagaactgcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aggtggtactctactggtaatgttctagaagtttgattcaggaatacacagaactgcctc 629
Query: 121 ctttaggacttgaatattctgcacaaacatccgaagtcccattggcacactcctttcctt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 ctttaggacttgaatattctgcacaaacatccgaagccccattggcacactcctttcctt 569
Query: 181 ttctttcaactgcagtgaattgcttgttatcatttcacatggcttgaaccacaggcatat 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttctttcacctgcagtgaattgcttgttatcatttcacatggcttgaaccacaggcatat 509
Query: 241 acaaacctcataacagcacctgtgttctttactttcctaattgccacacagtgttattaa 300
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 508 acaaacctcagaacagcacctgtgttctttactttcctaattgccacccagtgttattaa 449
Query: 301 tgttattaagcattatttatttcccaccatcactttggtctttcttcttacctatcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgttattaagcattatttatttcccaccatcactttggtctttcttcttacctatcctgt 389
Query: 361 ctatccaacagccagcctttctcgacccaccttcaaataaagactaagtttttaatatat 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctagccaacagccagcctttctcgacccaccttcaaataaagactaagtttttaatatat 329
Query: 421 aaccactcatcatcctaggctactttggcctaggttattcccagtggtcctatgctcttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaccactcatcatcctaggctactttggcctaggttattcccagtggtcctatgctcttg 269
Query: 481 cttcagtcttgttgagcaagcttgttagtgatgtgtgcttgtcactagctaatggctttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttcagtcttgttgagcaagcttgttagtgatgtgtgcttgtcactagctaatggctttg 209
Query: 541 tgcatttt 548
||||||||
Sbjct: 208 tgcatttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
