Query= MSMg01no525_i18.b1 MSMg01no525_i18.b1 CHROMAT_FILE:
MSMg01no525_i18.b1 PHD_FILE: MSMg01no525_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(585 letters)
>mm_chr3_81263857_81264841
Length = 985
Score = 944 bits (488), Expect = 0.0
Identities = 554/588 (94%), Gaps = 23/588 (3%)
Strand = Plus / Plus
Query: 1 ctgggccagagatctccgtggaaagcctctggtacccaggcccacagtttgcctacatgg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggccagagatttccgtggaaagcctctggtacccaggcccacagtttgcctacatgg 260
Query: 61 atcctatcccaggtagagagtatttctatgtatctgtgactgacacaaagggatgggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctatcccaggtagagagtatttctatgtatctgtgactgacacaaagggatgggaag 320
Query: 121 agggcgagactgaatcctctgataggtttagtaaaatccacagggacctgagatagtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcgagactgaatcctctgataggtttagtaaaatccacagggacctgagatagtgag 380
Query: 181 ggagtgcagcgtaatggaagcaatctgctacatggatgttgatgataatagaaagattgt 240
|||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 381 ggagtgcagcctaatggaagcaatctgatacagggatgttgatgataatagaaagaatgt 440
Query: 241 gtaggagggcaggaaggaaagagtaaattgtatatataagtccaggtccaatgtggctac 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 gtaggagggcaggaaggaaagagtaaattgcatatataagtccaggtccaatgtggctac 500
Query: 301 tgtggatcccaggtactctaaagaatcaattaggaatcaaatagattttaaaaaaagcat 360
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tgtggatcccaggtattctaaagaatcaattaggaatcaaatagatttttaaaaaagcat 560
Query: 361 taatttctgcagatgggatagatccctggggg-gaggggggctctctagatggcctttcc 419
|||||||||||||||||||||||||||||||| | |||||| | ||
Sbjct: 561 taatttctgcagatgggatagatccctgggggcgggggggg-------g--gg------- 604
Query: 420 ttcagtctctgctctatttttt--gtccatttcctttagacaggaacaattctgggttaa 477
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 605 ----gtctctgctctattttttttgtccatttcctttagacaggaacaattctgggttaa 660
Query: 478 aaattttgaggtaagtgggtggccccattcctcaactggaagctgtgcctatctactgga 537
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 661 aatttttgaggtaagtgggtggccccatccctcaactggaagctgtgcctatctactgga 720
Query: 538 ggtggtctctacagcttctatcttcccattggtcctgggaacctcttg 585
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggtggtctctacagcttctatcttcccattggtcctgggaacctcttg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_i18.g1 MSMg01no525_i18.g1 CHROMAT_FILE:
MSMg01no525_i18.g1 PHD_FILE: MSMg01no525_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(494 letters)
>mm_chr3_81411456_81412349
Length = 894
Score = 932 bits (482), Expect = 0.0
Identities = 485/486 (99%)
Strand = Plus / Minus
Query: 1 tcagtgctgaagaaagttttgtgctgtttttatgcatggtttctggaacaaagtctttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcagtgctgaagaaagttttgtgctgtttttatgcatggtttctggaacaaagtctttgg 427
Query: 61 ttcttgtcttacatgaatgatgacattacactgtcattttaaaatcgctgctggagactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcttgtcttacatgaatgatgacattacactgtcattttaaaatcgctgctggagactt 367
Query: 121 tagctatcaacgtcccattcaaaacttaatgagtcaatctttttgccctttgattacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagctatcaacgtcccattcaaaacttaatgagtcaatctttttgccctttgattacttt 307
Query: 181 tgagaaaggctgttttaaggtttcactaagatgggcatttatatgtagatatttttgaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 306 tgagaaaggctgttttaaggtttcactaagatgggcatttatatgtagatattttttaaa 247
Query: 241 tttaatttaaattgaactgttttttaaattgtttaaattgtgcttaaaggcaacttggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttaatttaaattgaactgttttttaaattgtttaaattgtgcttaaaggcaacttggag 187
Query: 301 aggaaagggtttattgggtttccatatcctgcatttcagagtccttgagtttctgcttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aggaaagggtttattgggtttccatatcctgcatttcagagtccttgagtttctgcttgc 127
Query: 361 ttttctggcattattttactttatggcaatgagtaatgattatgagagtgttagaattgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttttctggcattattttactttatggcaatgagtaatgattatgagagtgttagaattgc 67
Query: 421 aattattcactcaagcagatgctttgttgagtttgtgtcatatatcacagaggaagatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 aattattcactcaagcagatgctttgttgagtttgtgtcatatatcacagaggaagatga 7
Query: 481 taaaaa 486
||||||
Sbjct: 6 taaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
