Query= MSMg01no525_i20.b1 MSMg01no525_i20.b1 CHROMAT_FILE:
MSMg01no525_i20.b1 PHD_FILE: MSMg01no525_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:12 2005
(644 letters)
>mm_chr3_18727554_18728596
Length = 1043
Score = 571 bits (295), Expect = e-167
Identities = 345/369 (93%), Gaps = 18/369 (4%)
Strand = Plus / Minus
Query: 275 agcagggcatggtggtgcacacctttaatcccagcactcgagaagcagaggcaggcggat 334
||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct: 1043 agcagggcatggtggtgcacacctttaatgccagcactcaagaagcagtggcaggcggat 984
Query: 335 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctataca 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 ttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctataca 924
Query: 395 gagaaacctcatcttgaaaaaaacaaaacaaaacaaaaaacaaacaaacaaacaaacaaa 454
|||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct: 923 gagaaacctcatcttgaaaaaaacaaaacaaaacaaaa--caaa---acaaa---acaaa 872
Query: 455 caaaccaaaaacaaaccaaatcaacaaaaaaaccaacagcaacaacaagaagtgcaagat 514
|| |||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct: 871 ---ac--aaaacaaaac----caacaaaaaaaccaacagcaacaacaagaagtacaagat 821
Query: 515 cattgttcccaaatagcttcttcatgaacacttcattttggttgagtcttccctggtcct 574
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 820 cattgttcccaaatagcttct-catgaacagttcattttggttgagtcttccctggtcct 762
Query: 575 ttatttcctaccctaacactctactatagattgaaccttttgcccacttgactttcattg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttatttcctaccctaacactctactatagattgaaccttttgcccacttgactttcattg 702
Query: 635 ttacccctt 643
|||||||||
Sbjct: 701 ttacccctt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space: 654922
Effective search space used: 654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_i20.g1 MSMg01no525_i20.g1 CHROMAT_FILE:
MSMg01no525_i20.g1 PHD_FILE: MSMg01no525_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:13 2005
(511 letters)
>mm_chr3_18608570_18609480
Length = 911
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%)
Strand = Plus / Plus
Query: 2 gttaggcagaaaacagctcccattcagtgctgcattccagtgctaatgtccacttactca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gttaggcagaaaacagctcccattcagtgctgcattccagtgctaatgtccacttactca 261
Query: 62 acagctggaacttagtcagcctggcatgtgcgatagaatgattcccattggctgtgcacc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acagctggaacttagtcagcctggcatgtgcgatagaatgattcccattggctgtgcacc 321
Query: 122 acggaccactggggtataaagtctagggataggaaggaagacgataggaaggaagacgac 181
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 acggaccactggggtataaagtctagggataggaaggaagatgataggaaggaagacgac 381
Query: 182 aagggaatttagtctcccaaccaagatagaaagctgggccattacacattaccattaacg 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagggaatttagtctcccaaccaagatagaaagctgggccattacacattaccattaact 441
Query: 242 cattgaaatgacagtaacagcaggacatgcaaggaatgagaactgatgatggagatgaga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cattgaaatgacagtaacagcaggacatgcaaggaatgagaactgatgatggagatgaga 501
Query: 302 gaaaggagtgggacaaagaagagaccatcctggagcctccaacagtacgtgcacctgcta 361
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaggagtgggacaaagaagagtccatcctggagcctccaacagtacgtgcacctgcta 561
Query: 362 aaggctaaagaggggtctgaccagcacagtccctgaatgttccttcctaaattactatat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaggctaaagaggggtctgaccagcacagtccctgaatgttccttcctaaattactatat 621
Query: 422 atggattgttcctttgccattctccttacaatcgtttcagagaaaaatctaaaatttata 481
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 622 atggattgttcctttgccattctcctcacaatcgtttcagagaaaaatctaaaatttaaa 681
Query: 482 cttctaggtaattcatttctgtttaattca 511
|||||||||| |||||||||||||||||||
Sbjct: 682 cttctaggtagttcatttctgtttaattca 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
